RNA id: XR_005038470.1


Basic Information

Item Value
RNA id XR_005038470.1
length 970
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC118942833
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5175495 ~ 5176684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atccaggtttggccgggttaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggttaaataaataaaaaacctaatcctaactttttaaatgtatttttatggtTATAGTAACACTATTTACCtgctgtgttcctgtgtgtctgtctactaggTACCCATAACGTTAGgtgatgtgtgtctgtctactaggTGCCCATAACGTTAGgtgatgtgtgtctgtctactaggTGCCCATAACGTTAGGtgatgtgtgttcctgtgtgtctgtctactaggTACCCATAACGTTAGGtgatgtgtgttcctgtgtgtctgtctactaggTGCCCATAACGTTAGGtgatgtgtgttcctgtgtgtctgtctactaggTACCCATAACGTTAGGtgatgtgtgttcctgtgtgtctgtctactaggTACCCATAACGTTAGGtgatgtgtgttcctgtgtgtctgtctactaggTACCCATAACGTTAGGtgatgtgtgttcctgtgtgtctgtctactaggTACCCATAACGTTAGGtgatgtgtgttcctgtgtgtctgtctactaggTACCCATAACGTTAGgtgatgtgtgtctgtctactaggTGCCCATAACGTTAGgtgatgtgtgtctgtctactaggTGCCCATAACGTTAGGtgatgtgtgttcctgtgtgtctgtctactaggTACCCATAACGTTAGgtgatgtgtgtctgtctactaggTGCCCATAACGTTAGgtgatgtgtgtctgtctactaggTGCCCATATCGTTCGgtgatgtgtgtctgtctactaggTGCCCATAACGTTAGGtgatgtgtgttcctgtgtgtctgtctactaggTACCCATAACGTTAGgtgatgtgtgtctgtctactaggTGCCCATAACGTTAGgtgatgtgtgtctgtctactaggTGCCCATAACGTTAGGtgatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949091 lncRNA upstream 3378 5171514 ~ 5172117 (+) True G1702821
TU1949090 lncRNA upstream 3676 5171514 ~ 5171819 (+) False G1702821
TU1948986 lncRNA upstream 5325 5155866 ~ 5170170 (+) True G1702740
TU1948981 lncRNA upstream 7675 5143644 ~ 5167820 (+) True G1702735
TU1949080 lncRNA upstream 55638 5119644 ~ 5119857 (+) True G1702813
TU1949095 lncRNA downstream 25389 5202073 ~ 5202278 (+) True G1702825
TU1949107 lncRNA downstream 41157 5217841 ~ 5218298 (+) True G1702833
TU1949122 lncRNA downstream 64311 5240995 ~ 5241664 (+) True G1702847
TU1949142 lncRNA downstream 82549 5259233 ~ 5259935 (+) True G1702859
TU1949144 lncRNA downstream 91160 5267844 ~ 5268219 (+) True G1702860
XM_036956650.1 mRNA upstream 2066 5120120 ~ 5173429 (+) True LOC110490690
XM_036956648.1 mRNA upstream 63560 4998226 ~ 5111935 (+) False LOC118936571
XM_036956649.1 mRNA upstream 63560 5071573 ~ 5111935 (+) True LOC118936571
XR_005038439.1 mRNA upstream 322578 4851989 ~ 4852917 (+) True LOC118942787
XR_005038458.1 mRNA upstream 713924 4459746 ~ 4461571 (+) True LOC118942831
XM_036956653.1 mRNA downstream 6227 5182911 ~ 5200193 (+) False LOC110516940
XM_036956654.1 mRNA downstream 6574 5183258 ~ 5200193 (+) False LOC110516940
XM_036956652.1 mRNA downstream 7719 5184403 ~ 5200193 (+) False LOC110516940
XM_036956670.1 mRNA downstream 163850 5340534 ~ 5350434 (+) False LOC118942835
XM_036956669.1 mRNA downstream 163851 5340535 ~ 5350434 (+) True LOC118942835
TU1949056 other upstream 121031 5052447 ~ 5054464 (+) True G1702793
TU1948666 other upstream 774514 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 779980 4394993 ~ 4395515 (+) True G1702554
TU1947491 other upstream 1239458 3932787 ~ 3936037 (+) False G1701654
TU1948974 other downstream 7790 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 77481 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 77481 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 408847 5585531 ~ 5596428 (+) True LOC110511233
TU1949988 other downstream 540515 5717199 ~ 5717701 (+) True G1703391

Expression Profile