RNA id: XM_036956653.1


Basic Information

Item Value
RNA id XM_036956653.1
length 2205
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110516940
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5182911 ~ 5200193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATacattgttcttcttcttgtGATTGATTCGTCAACCTGATTCATCTTCAGTGCTCGTGCCTTACTTTGGACCCGCCACTAGGGGCGACAAAATTAACGTTCGTTTTCCTCGCTAACttttacaagcaagttattggaTTGTGAAAGTAACGTGAGAGACAGAATGGCAGAGAATTGTGAGAGAATGTCAGAATGGCATAGAAGCAGTTCCCAAATAAATACCTTGGACAATGAGAAACTTGTACGACCTAAAGAGAAACTGCGCGTGTTATTGCAGCAGGCAGGTGCAGACAAAGACGTTTTCACCATGAAAGAGGTGATATTCTACCTGGGCCAGTACATCATGAAGAAACAGCTTTATGACATGAAGCAGCAACACATAGTGCACTGTGCTGACGACCccctgggggctgtactgggagTGGACAGCTTCTCTGTTAAAGAACCCcgAGTTCTCTTCGCTATGATCACACAAAATCTCCTAGCAGTGAAAAATCAAGAATCCCAATCTGTCTGCACGGAACCCAGGAGCCACAGTGAACCGGATAGAGGGCCTAAGGAGACGGACTCAGACTGTCATTCATCATCTACCTCAGAAcgcaggaggagaaggaggagtagTGACCCTGAGGGGACGTCGTCGACACAAGAGGAGGACGGGTGTGAGTCCAGGAAGAGACATAGGTCAGACAGCTTGTCTCTGACCTTTGATGACAGCATGTCCTGGTATGTGATTGGAGGCCTGAGACGAGACCGCAGGAGCAGCGAGTCTTCAGTCTCACACAGTAACGCTGAAGTAGGTTCATTGGTCAGTGACGCGGGTGACGATGTTCTGAGCCAGGATCTGGGCTCAGACTCTGATAACTTCAGCGTGGAGTTTGAGGTGGAGTCCATCGACTCGGACGCCTACAGCGATCCCGAAGAGGCTTCAGTGTCTGGAGAGGACGAGGTGTATGAAGTCACCATCTTCGAGGCAGAGGACGAGGACTCGTTCGATGACGACACTGAAATCACGGAAGCAGACTACTGGAAGTGCTCAAAGTGTGAGGAGTTGAACCCTCCCCTCCCCCGAAACTGCAACCGCTGCTGGACGCTAAGAATGGACTGGTTTCCCGATTCTGACAGCAACTCTGCTGCCCCCAACCTCAAACCCTTACCCCCAAAGCCTACCCCAGCCCCGGCAGAGCCCGACGAGACCGAAGGTCTGGATGTCCCCGACGGGAAGAGAGCCAAGTCGCCCCTACCCCTCCTCAAAGACTCCCAGGAATTGATGTCCGTCTCTGGCCCCGATTCCCAAGACTCGGCCTGCTCCTCCCAGCCCTCCACCTCTTCTTCGAACTCCAACGGCGTGGGCTCAGGCTCGTCCTCTAGCGCCCCCTTCAGTCAAGAAGTCATGGCACCAGACTTGGAGCGTTTCAACAGCCTGGAGGCTCACCTCCCCGCCAGCTGCCTGGAGCCCTGCGTCATCTGTCAGACCAGGCCCAAGAACGGCTGCATCGTACACGGACGCACGGGGCACCTCATGGCCTGTTACACCTGCGCCAGGAAACTGAAGAAGAGGAACAAGCTGTGTCCCGTCTGCAGGCAGCCGATCCAGTCTGTCGTCTTAATTTATCTCAGCTGAGGACGGCTATCGGCTAGACTGTGCATTCCAAATAAGCAGTCTATTCCCTTATGTAAGTGCACTACTCTCAACCATGGTctcaataggactctggtctaacgtagtgcactatataggggagtaGGGTGTAACCCTTAGCTACACAACTCCCTGTTCCTCAAAAACAACTTCAATCctaaatgaataaataatatgTTTTAATTTTGTTTATTTGGAAGTGATTTTATTTATAAACAAGAGTTTGTTGACTCTTATTAAACAAGgtgcctgttgttgttgttgttgttgttgtgttgattTGGGATTGATTTCTAGTGTTCAGTCAAATAGCCTTTCTAGGTTTTTCAAATGGATCAAATTCTCTTAGTGGTGAAATATTCTATATATTTTATTAAATAAAGAATATCTAGCAAATTAACAGAGATGTACATTTGGGTTTTTCTTAGTTTATTTTCACCTCGTCTTCCCTCTATTCTACACAGATGATAGTGTTTTATATAATTGTATCGATAATGACATGGGGTTTAAACTACGTGACAGTCAAATGTCTCAATAAAGTTGTTCGCCGGTAGAAAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949091 lncRNA upstream 10794 5171514 ~ 5172117 (+) True G1702821
TU1949090 lncRNA upstream 11092 5171514 ~ 5171819 (+) False G1702821
TU1948986 lncRNA upstream 12741 5155866 ~ 5170170 (+) True G1702740
TU1948981 lncRNA upstream 15091 5143644 ~ 5167820 (+) True G1702735
TU1949080 lncRNA upstream 63054 5119644 ~ 5119857 (+) True G1702813
TU1949095 lncRNA downstream 1880 5202073 ~ 5202278 (+) True G1702825
TU1949107 lncRNA downstream 17648 5217841 ~ 5218298 (+) True G1702833
TU1949122 lncRNA downstream 40802 5240995 ~ 5241664 (+) True G1702847
TU1949142 lncRNA downstream 59040 5259233 ~ 5259935 (+) True G1702859
TU1949144 lncRNA downstream 67651 5267844 ~ 5268219 (+) True G1702860
XM_036956651.1 mRNA upstream 2972 5173660 ~ 5179939 (+) False LOC118942832
XR_005038468.1 mRNA upstream 2972 5173660 ~ 5179939 (+) False LOC118942832
XR_005038469.1 mRNA upstream 2972 5173660 ~ 5179939 (+) True LOC118942832
XR_005038470.1 mRNA upstream 6227 5175495 ~ 5176684 (+) True LOC118942833
XM_036956650.1 mRNA upstream 9482 5120120 ~ 5173429 (+) True LOC110490690
XM_036956670.1 mRNA downstream 140341 5340534 ~ 5350434 (+) False LOC118942835
XM_036956669.1 mRNA downstream 140342 5340535 ~ 5350434 (+) True LOC118942835
XM_036956671.1 mRNA downstream 202015 5402208 ~ 5416558 (+) True LOC118942836
XM_036956674.1 mRNA downstream 257346 5457539 ~ 5472994 (+) True LOC110491886
XM_036956679.1 mRNA downstream 363029 5563222 ~ 5598052 (+) False LOC110511233
TU1949056 other upstream 128447 5052447 ~ 5054464 (+) True G1702793
TU1948666 other upstream 781930 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 787396 4394993 ~ 4395515 (+) True G1702554
TU1947491 other upstream 1246874 3932787 ~ 3936037 (+) False G1701654
TU1949137 other downstream 53972 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 53972 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 385338 5585531 ~ 5596428 (+) True LOC110511233
TU1949988 other downstream 517006 5717199 ~ 5717701 (+) True G1703391
TU1950048 other downstream 783152 5983345 ~ 5994810 (+) True G1703427

Expression Profile