RNA id: XM_036956662.1


Basic Information

Item Value
RNA id XM_036956662.1
length 4410
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110518655
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5202814 ~ 5224336 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGACTATGCTACAAATGGACCATACTACACGCTTTAGACCGGATATAGAACAGCCGGACCATACTACACGCTTTAGACCGGATATAGAATTCCCAGATTTTGCCCAACCCAGAAACGAGAGAACTCACCCATCCtgcgttagaagttcagaacaagaaagtgtaggctatatagaaatgaCTCtcgttaaaaaaaatgtgttgttaaACTTAACAATAAGGATTTATATCagcctaatcgaggtgtagattacGGACGACAGTGTTCGAACTTGAAAAACGAATGCGTGGgatttatatatatatgcaaCTCTGCACATCCAATGACAATGCCGGCGATAGGTATAACATGTGGAGACGCTTGTTGATTTGACAGCTACAAAGCAGCTacacctctgacaccgcctaaaCACCGAGGTTACCGCGGATCCAATTCAATCCTGgggtcagtgctctaaaatgagtctctcagGGGAACTTGACACGGAAGCTAACAGGTTCTGCAGACGGTGcatcaccagacactgggagcaGCCTGCTCCGTCAGGACATTATGGCTGTCCTCGGTGTAGAAAGAGGTTCAGGACACGTCCAGTTCTACTGCAACGGGCTGAACCCAACGATGAAGCGAGAGGCTCTGAAAACATGGATGTCAGCCTGCAGAGAGCTATAGTAAACCACAAAGACAGTCTGAAGATGAGGTATGAATGTGTGATAGAAGGCCTGGTAAAAGCAGGGAGTCAAACCTCCCTCAACAGGATTTACACAGAGCTGTAcatcacagagggagagagtgaagggcTTAACGATGAACATGAGATGTGGCAGCTAGAGACGGCATGCAGGACACCGACCTCGCGTGACACGGCAATCCACTGCAATGACCTCTTTAAACCCTTAGCTGGCCAGGAGAGAAGCATCAGAACTGTGCTGACCAAGGGCATCGCTGGCATCggaaaaacagtctctgtgcagaCGTTCATCCTCGACTGGGCTGAAGGGAAGACAAACCAAGATGTGGAGATCATATTTGTGCTTCCTTTCCGGGAGCTGAACTTGGTCAAAGATCTCCAGTACAGTCTTCTGAGACTTCTCCATGACTTCCACCCAGAACTAGATATAGTCAATGCAGAGAAACTCGCTGCCTGTAAAGCTATGTTCATCTTGGATGGGTTGGATGAAAGCAGAATTCCATTGGATTTTCAGTGCAACAAAATGATGTCTGATGTCACACAGACATCGTCTGTAGATGTTCTGCTGACAAACCTCATCAAGGGGAATCTGCTTCCCTCGGCTCTCCTCTGGATAACCTCCCGACCAGCAGCAACCAATCAGATCCCCTCTGAGTGTGTCgaccaggtgacagaggtacgagggttcaaCGACCAACAGAAGGAGGAGTACTTCAGGAAAAGATTCCGTGATGATGAGGACCTGGCCAACAGAATCATCTCCcacataaagacatcaaggagcctccacGTCATGTGTCACATGCCAGTTTTCTGTTGGATTTCTGCAACCGTCCTTGAACACATGTCGAGGACAGACGAGAGACGAGAGATGCCCAAGACTCTGACTGAGACGTTCACACACTTCGTGCTCATTCACACCAGCCCGAAGAACCAGAAGTGTCCTGGAAAAGACGAAATGGATCAACAGGAGCTCCTGGAGTCTGATAAGGAAGCTCTTCTGAAGCTGGGGAAGCTGGCGTTTGAACATCTGGAGAAGGGAAATCTCGTGTTCTATGAAGAAGACCTGAAAGAGTGTGGCATTGATGTCAAAGAAGCCTCGGTGTACTCGGGCGTGTGCACACAAGTCTTTAAAGAAGAGTCTGTGTTGTTTCAGAGAGTGGTGTACTGCTTTGTTCATCTGAGCGTTCAGGAGTTTCTCTCCGCTGTCTACGTGTACCATTGTTACACAACCAAGAACATGGATGAACTGAAGCCTTTCCTCCAGGCGACTAGAGTCCCGTCTGAAGAGATAACCTTACATGAGCTGCTGAAGAGTACCGCGAATAAAGCCTTGGAGAGTAAGACTGGACACCTGGACCTTGTCGTCCGCTTCCTTCATGGCATGTCACTGGCAGCCAATCAGAAACTCCTACGAGGTCTGGTGACACAGACAGAAAGCAGTCCAGAGAGCGTTAAGAAAACAATCCGTTCCCTGAAGATGATGCAGAATGCCGACATGTCCCCCGAGAGGTGCATCAATCTCTTCCACTGTCTGATAGAGATGAAAACCCATTCGGTACAGCAGGAAATCGAGAAATACACGAGGTCAGAGAAAAGATCCAAAAACCTGCCTCTTACGTACTGTTCAGCGTTGGCCTACATGCTGCAGATATCAGACGAGGTTCTGGAGGCGTTCGACCTGAAGAAATACAAGACCTCGCAGGAGGGTCGTAGGAGACTGCTTCCAGCTGTGAGAGTCTGCAGGAAGGCTCTACTTGCTGACTGTCAACTCATAGAAGCATCGTGTGAACTGTTGCTCTCTGCTCTCAGCTCAAACCCCTCaaacctgagagagctggacatgagtaacaatgacctgaacgattcaggagtgaagctactctctgctggactggggaatccccactgtaaactggagactctgaaGCTATCAGGCTGTGGAGTTACAGAAGAAGGCTGTGCTGccctggtctcagctctgaggtcaaaccccaaccacctgagagagctggacctgagtgaCAATCATCTAGGAGACTCAATGGTGCAACATGTCTCTCCTGGATTAGAAGATTCATTCTGGAGACTGGAGATCCTAAGTCTCTCTGGCTGTAAACTCACGGAAACATCTTGTGAAGTGTTGGCCTCAGCTCTCAGTTCctcctcacacctgagagagctggatctgagtaacaatgacctgctggattcaggagtgaagctgctctttGCTGGACGGGGGGATTCACCATGTAAACTGGAGATTCTGAGTCTCTCTGGCTGTAAACTCACGGAAGCATCTTGTGAAGTGTTGGCCTCGGCTCTCAGTTCctcctcacacctgagagagctggatctgagtaacaatgacctgctggattcaggagtgaagctgctctttGCTGGACGGGGGGATTCACCATGTAAACTGGAGATTCTGAGGTTGGCATTCTGTgaagtcacagaggaaggctgtgcttctctggcctCAGCTCTGAAGTCAAACCCTTCACACCTGCGAGAGCTGGATCTGAGCTACAATCACCTAGGAGACTCGggagtcagactgctctctgctggactggaggatccacactgcagactggagaaactcaaTGTGGAACATGGAGGACAGTACACAATAAAACATGGGCttagaaaatATGGCTGTGTGCTCTCACTGGACCCGAACACAGCAAGCagaaacctctctctgtctgaggagaacagaacggtgacatggaggacagaggagcagccGTATCCTGATCACCCGGAGAGATTTCAGGATTTCGACCAGGTGCTGTGTACAGAGGGTCTGTCAgggcgctgttactgggaggtagagtggagtgggAGAGGAGCTCATATCGGTGTGACATATAAAGGCATCAATCGGTCAGGAAGGGGTGATGACAGTGGGCTTGGACCTAGTGACAAAGCCTGGTGTCTGGTCTGTTGTGATGACCGTTACATGGCCTGGATCAATAGTAAGCTCACTACCATaccttccccctcctcccccccgtcCAACAGAGTAGGACtgtatctggactggccagccGGCACGATGTCTTTCTACAAGGTCTGTTCGGATACACTGACTCACCTGCACACATTCTACACCACATTTACCGAGCCCCTCTACCCAGGGCTGTTTATTTGGTGTcactcctcagtgtccctgtgtcagGTGGTGGCCCCTGTGTCAAAAACACAACGTGATGTTTCGCTCTAATCACGGTCCTGTTCGGTAGTAAGGAGACGCCGTGTAATCACAGCacccgggccttattgcttaattagaaaACGGCTCCCTGGGAAATCTGAGATTTGACTGGTTTAAATGGTGTGACAAGTCATTGATAATTACCCTATTCCCACACATCATTTAGATGTAGTATCAGTTGTAAAATAGATAGTTAGTATTGATTCTAGATGGTCATATTGGCCATTCAATCCGGTCTTGACCATATTACCACAAACCCCCtaaaggtgccttattgctattataaacgggTAATGTACGGGTAATGTAATTAGAgctgtaaaaatacatgtttttgtcACACCCGGTCTGATAtatcacggctgtcagccaatcaaaaTGACACGTCACAGATTTGACCTGTGTGAAATGAAGACGATGGAATAAAGAGTTTGAATTGTTTAAATGGTATTTGAATAAATGCAATAAAACTGAAGTTTGGCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949683 lncRNA downstream 757 5200387 ~ 5202057 (-) False G1703190
TU1949684 lncRNA downstream 757 5200387 ~ 5202057 (-) False G1703190
TU1949685 lncRNA downstream 757 5200387 ~ 5202057 (-) False G1703190
TU1949686 lncRNA downstream 757 5200387 ~ 5202057 (-) False G1703190
TU1949689 lncRNA downstream 757 5200387 ~ 5202057 (-) False G1703190
TU1949726 lncRNA upstream 46993 5270345 ~ 5271041 (-) True G1703215
TU1949730 lncRNA upstream 55676 5279028 ~ 5279429 (-) True G1703219
TU1949733 lncRNA upstream 73976 5297328 ~ 5298348 (-) True G1703222
TU1949736 lncRNA upstream 77253 5300605 ~ 5301853 (-) True G1703225
TU1949824 lncRNA upstream 91112 5314464 ~ 5314770 (-) True G1703292
XM_036958452.1 mRNA downstream 142496 5052618 ~ 5060318 (-) True LOC118942989
XM_036956647.1 mRNA downstream 232423 4932216 ~ 4970391 (-) False LOC118936570
XR_005038463.1 mRNA downstream 232425 4932216 ~ 4970389 (-) False LOC118936570
XM_036958453.1 mRNA upstream 2717 5226069 ~ 5228087 (-) True LOC118942990
XM_036956667.1 mRNA upstream 12888 5236240 ~ 5313028 (-) False LOC118942834
XM_036956668.1 mRNA upstream 12888 5236240 ~ 5313033 (-) False LOC118942834
XM_036956672.1 mRNA upstream 197522 5420874 ~ 5426626 (-) False LOC118942837
XM_036956675.1 mRNA upstream 211924 5435276 ~ 5452253 (-) True LOC110491894
TU1949687 other downstream 757 5200827 ~ 5202057 (-) True G1703190
TU1949491 other downstream 232459 4967580 ~ 4970355 (-) True LOC118936570
TU1949495 other downstream 236795 4961982 ~ 4966019 (-) False LOC118936570
TU1949528 other downstream 255403 4946598 ~ 4947411 (-) True G1703085
TU1949477 other downstream 268825 4932214 ~ 4933989 (-) False LOC118936570
TU1949706 other upstream 9283 5232635 ~ 5235225 (-) True G1703200
TU1949704 other upstream 14056 5237408 ~ 5312973 (-) True LOC118942834
TU1949830 other upstream 196984 5420336 ~ 5426592 (-) True LOC118942837
TU1949859 other upstream 206116 5429468 ~ 5430172 (-) True G1703323
TU1949828 other upstream 229596 5452948 ~ 5456111 (-) True LOC110491889

Expression Profile