RNA id: XM_036956667.1


Basic Information

Item Value
RNA id XM_036956667.1
length 2679
RNA type mRNA
GC content 0.54
exon number 9
gene id LOC118942834
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5236240 ~ 5313033 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACTTGGCCGTGTGTGAATATAGTGATAATGCCATACAGGGCGGTGTGCAGGCAGGCAGGGGACCCGACGGTGTAATGTGGTCGGGGGGAGGGTTGATCTGTCGACTAAGAACCATTCAGGCGATTGGGAACTTTAAACAGTTGTTATGAATGCGGTCGGACGGGCGAGGGTGACAGCGGTGTGACTTCAAGAGACGTCTTCACAGAATAAGTTGTCCGCACACAGCGAGCTGCAGGAAATATACATTTAGTAATAAGGTTGTCACTGTCCCGTACGAGACGATGTTTCTTTTTGCGCTCTGCCTATACCTCGGGAAGTTGGTGTCGTCCGGTGTCAGTTTGGAGTTCCGTTATCACAACACCGTGGAGGTGGAGAGATACCTGCGGGACGTTAACAACACCTTCGACTTCACACACCTGCACAGTATTGGAAAGTCTGTTGAAGGGAGAGACCTCTGGGTGCTCATTCTGGGAAAGAATCCGGCTGAGCACCAGATGGGAATTCCTGAATTCAAATATGTTGGGAATATGCATGGAAATGAGGTGGTGGGCAGAGTTCTCCTGCTCCAGCTGATCGATCACCTGACCCGTGGTTACCTTAGCGACCCGCTGGTGACCCGCCTCCTGAACAGCACCCGCGTCCACATCCTGGTTTCCATGAACCCAGACGGCTTCGAGTCCTCCAGCAGAGACTGCATGTACTCCCAGGGGAGGTTCAATAAGAACGGCATCGATCTGAACAGGAACTTCCCAGATGCCTTCTCTAAGAAGGAGAGtggaatgagagagatggaggtgagaGCCATTATGGACTGGCTGAAGACTGAGAGCTTCGTCCTGTCGGCCAACCTGCACGGTGGGGCTGTGGTGGCCAGCTACCCCTACGACAACAGCAATGGAGGTAGTGAGCTGCAGAGTGGATCCAGTGTTGCCCCCGACAACGACGTGTTGATCCAGCTGGCTAAGACCTACTCCTACACCCACAGCCAGATGCACAAGGGAGACCACTGTTACGACTCCAAGGACTTTAAGGAGGGCATCACCAACGGCTACTACTGGTACCCTCTACCAGGAGGGATGCAGGACTATAACTACGTGTGGGGCCAGTGTCTAGAGATCACCTTGGAGCTGTCCTGTTGTAAATACCCTCCAGAGAGTGATCTGCCTGGGCTCTGGGACGCCAACCGGGCCGCGCTGCTGGCATACATGCAACAGGTCCATCTGGgtGTGAAAGGGCAGGTGTTGGACGCGGAGGGAAACCCATTACAGAATGctctggtggaggtggaggggagacagAACCTCTGTCCCTTCAGAACCGACCGCCATGGAGAATACTACAGACTGCTGCTGCCAGGCAACTACACCTTTAGGGTGACGTTCCCGGGCCACCAGGTGTTGACGGAGACGTTGACGGTCCCGTACGGCCCCGACTCATTCTCGGCCCTCGTCCACAACTTCCAGCTGCAGAGGTCCGCAGCCGCCACCCCTGGCCCCAGCCGCCCCACCCAGTCCTGCACCCCACCCCAGGTCTGGAGGCCCCTGGGTGGCCACTCTCCCAGCCTGGGCCCCTCGGGCGTCACCATCCTCCTGGTTCTCCTGGTTCTCCGGGATACCATGTTACTGTGACCGAGAGACGGGccacgtcccaaatggaaccttattaaagtagtgcactatataggggataggatgccatttgggacgtatccatggagacagacagactgagatggGATCTCCCAGTCCAGAGacattctcttttttttcttcttcagtaTTTTTGTATAAACAAAGAAAATCCTATATATATTTTCTTGTAACACTTCTCATTGCTCTACCTTGCACAAACACGTGAGCCATTttgtgtttttaaaaaatgtaatgttttgtATTGATGCTTTtttagtttttaaaaaaaaatattgtgctGAAAGAAAGCAATTACTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCAGCCAGCAATCTGCCATGCCAGCAATCTGCCAGCCAGCAATCTGCCATGCCAGCAATCTGCCAGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCAGCCAGCAATCTGCCATGCCAGCAATCTGCCAGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAGGAATCTGCCATGCCAGCAATCTGCCATGCCAGCAATCTGCCATGCCAAGCTGAGAAGAAGAGACTAAAGTCAAGGtgtaagggagggaggggtgttgaG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949664 lncRNA downstream 23109 5202859 ~ 5213131 (-) False LOC110518655
TU1949666 lncRNA downstream 23109 5202859 ~ 5213131 (-) False LOC110518655
TU1949671 lncRNA downstream 23109 5203009 ~ 5213131 (-) False LOC110518655
TU1949675 lncRNA downstream 23109 5203009 ~ 5213131 (-) True LOC110518655
TU1949691 lncRNA downstream 29370 5206018 ~ 5206870 (-) True G1703191
TU1949824 lncRNA upstream 1436 5314464 ~ 5314770 (-) True G1703292
TU1949826 lncRNA upstream 3105 5316133 ~ 5317213 (-) True G1703294
TU1949836 lncRNA upstream 10563 5323591 ~ 5323837 (-) True G1703302
TU1949840 lncRNA upstream 16221 5329249 ~ 5329565 (-) True G1703305
TU1949841 lncRNA upstream 22334 5335362 ~ 5335759 (-) True G1703306
XM_036958453.1 mRNA downstream 8153 5226069 ~ 5228087 (-) True LOC118942990
XM_036956657.1 mRNA downstream 11904 5202814 ~ 5224336 (-) False LOC110518655
XM_036956663.1 mRNA downstream 11904 5202814 ~ 5224336 (-) False LOC110518655
XM_036956656.1 mRNA downstream 11924 5202814 ~ 5224316 (-) False LOC110518655
XM_036956659.1 mRNA downstream 12457 5202814 ~ 5223783 (-) False LOC110518655
XM_036956672.1 mRNA upstream 107846 5420874 ~ 5426626 (-) False LOC118942837
XM_036956675.1 mRNA upstream 122248 5435276 ~ 5452253 (-) True LOC110491894
XR_005038473.1 mRNA upstream 130931 5443959 ~ 5449709 (-) False LOC118942838
XR_005038471.1 mRNA upstream 135909 5448937 ~ 5449709 (-) False LOC118942838
XR_005038474.1 mRNA upstream 135909 5448937 ~ 5449928 (-) False LOC118942838
TU1949706 other downstream 1015 5232635 ~ 5235225 (-) True G1703200
TU1949687 other downstream 34183 5200827 ~ 5202057 (-) True G1703190
TU1949491 other downstream 265885 4967580 ~ 4970355 (-) True LOC118936570
TU1949495 other downstream 270221 4961982 ~ 4966019 (-) False LOC118936570
TU1949528 other downstream 288829 4946598 ~ 4947411 (-) True G1703085
TU1949830 other upstream 107308 5420336 ~ 5426592 (-) True LOC118942837
TU1949859 other upstream 116440 5429468 ~ 5430172 (-) True G1703323
TU1949828 other upstream 139920 5452948 ~ 5456111 (-) True LOC110491889
TU1950407 other upstream 586314 5899342 ~ 5899781 (-) True G1703658
TU1950464 other upstream 637006 5950034 ~ 5963423 (-) False LOC118942843

Expression Profile