Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU1949830 |
| length | 1032 |
| RNA type | TUCP |
| GC content | 0.46 |
| exon number | 4 |
| gene id | LOC118942837 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 5420336 ~ 5426626 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006955 | immune response | biological_process |
| GO:0002474 | antigen processing and presentation of peptide antigen via MHC class I | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0042612 | MHC class I protein complex | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1949851 | lncRNA | downstream | 50792 | 5369094 ~ 5369544 (-) | True | G1703316 |
| TU1949848 | lncRNA | downstream | 59116 | 5360596 ~ 5361220 (-) | True | G1703313 |
| TU1949847 | lncRNA | downstream | 59818 | 5360296 ~ 5360518 (-) | True | G1703312 |
| TU1949831 | lncRNA | downstream | 61418 | 5351270 ~ 5358918 (-) | True | G1703298 |
| TU1949842 | lncRNA | downstream | 84056 | 5336006 ~ 5336280 (-) | True | G1703307 |
| TU1949858 | lncRNA | upstream | 2876 | 5429468 ~ 5430889 (-) | False | G1703323 |
| TU1949866 | lncRNA | upstream | 39977 | 5466569 ~ 5467856 (-) | True | G1703330 |
| TU1949871 | lncRNA | upstream | 55269 | 5481861 ~ 5482386 (-) | True | G1703334 |
| TU1950203 | lncRNA | upstream | 73125 | 5499717 ~ 5500536 (-) | True | G1703550 |
| TU1950263 | lncRNA | upstream | 156565 | 5583157 ~ 5585446 (-) | True | G1703573 |
| XM_036956668.1 | mRNA | downstream | 107303 | 5236240 ~ 5313033 (-) | False | LOC118942834 |
| XM_036956667.1 | mRNA | downstream | 107308 | 5236240 ~ 5313028 (-) | False | LOC118942834 |
| XM_036958453.1 | mRNA | downstream | 192249 | 5226069 ~ 5228087 (-) | True | LOC118942990 |
| XM_036956657.1 | mRNA | downstream | 196000 | 5202814 ~ 5224336 (-) | False | LOC110518655 |
| XM_036956663.1 | mRNA | downstream | 196000 | 5202814 ~ 5224336 (-) | False | LOC110518655 |
| XM_036956675.1 | mRNA | upstream | 8684 | 5435276 ~ 5452253 (-) | True | LOC110491894 |
| XR_005038473.1 | mRNA | upstream | 17367 | 5443959 ~ 5449709 (-) | False | LOC118942838 |
| XR_005038471.1 | mRNA | upstream | 22345 | 5448937 ~ 5449709 (-) | False | LOC118942838 |
| XR_005038474.1 | mRNA | upstream | 22345 | 5448937 ~ 5449928 (-) | False | LOC118942838 |
| XR_005038472.1 | mRNA | upstream | 22359 | 5448951 ~ 5449709 (-) | True | LOC118942838 |
| TU1949704 | other | downstream | 107363 | 5237408 ~ 5312973 (-) | True | LOC118942834 |
| TU1949706 | other | downstream | 185111 | 5232635 ~ 5235225 (-) | True | G1703200 |
| TU1949687 | other | downstream | 218279 | 5200827 ~ 5202057 (-) | True | G1703190 |
| TU1949491 | other | downstream | 449981 | 4967580 ~ 4970355 (-) | True | LOC118936570 |
| TU1949495 | other | downstream | 454317 | 4961982 ~ 4966019 (-) | False | LOC118936570 |
| TU1949859 | other | upstream | 2876 | 5429468 ~ 5430172 (-) | True | G1703323 |
| TU1949828 | other | upstream | 26356 | 5452948 ~ 5456111 (-) | True | LOC110491889 |
| TU1950407 | other | upstream | 472750 | 5899342 ~ 5899781 (-) | True | G1703658 |
| TU1950464 | other | upstream | 523442 | 5950034 ~ 5963423 (-) | False | LOC118942843 |
| TU1950429 | other | upstream | 565106 | 5991698 ~ 5996426 (-) | True | G1703669 |
