RNA id: TU1949828


Basic Information

Item Value
RNA id TU1949828
length 1314
RNA type TUCP
GC content 0.39
exon number 4
gene id LOC110491889
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5452948 ~ 5456355 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTACTTTCAGTTAGGTTATTTCCACAGCCAGGCACAGGCAGACGGATCTTTCCATTATCTATTTTATTTGAGTACGAATAATTCCGAATTACACCAAATATGAAGTATATTCTGTCAATCGTTGTACTTGGGCTCATTTACAGCGCTGTGGAGGCCAAAGAATCTCCCCCCAAGGTGCAGGTGTACAGCCGTAACCCTGGCAACTTTGGCGATAAGAACACCCTGATCTGTCACGTGAGTGGCTTCCACCCCCCTGACATCAGCATCCAGCTCCTGAAGAACGGCGTGGAGATCCCCGACGCCAAGCAGACAGACCTGGCCTTCGAACAGGGATGGCAGTTCCACCTCACCAAGAGTGTTGGATTCACACCAGCCAGCGGGGAGGAGTACACCTGCAGAGTCCGCCACCTGAAGAATCTGAAGAcctacacctgggAGGCAGATATGTAAGGATCTGGAGCAGGACATAATGGTGGCCAGTCCATCTGTGGTTGTCCAATCCGTGCCAGCCTTTATCTAGAGCTGAGATGACAAACTTGGGGCTTTTGTTTTCATTTTTTGGTACCACTTTGTGCGATGGTGCCAGTTTCAAGGGTTTTTGAATTGACAATCATTACTAAAACACTTACACACAAAATTGTTAAGATtttttttgggagggggggggcaagCTATTTTTAATTGACAAATGGCACAGCTTCTGATGAACATTCTCAATCAAAGTCACTTCTTTCAAAAACACAAAGGCTTTTGtcaagtattttattttttagattaaaaaaaaacaaacttTAATTTCCTTGAAATTGGTACCATTAGATTCAAACACTTTTTCTCATAAATaaccaataaataaataaactccaTAACTTGCACTATTTGACTGTGGTTTTAGCTATAAGCAACAGTGTAATGTAAAGAATGATATTTGATccgcattttatttttttttaaagcccaaATTATTTTCGAGGAAGCCCCATGTGATATGTATTTGTGTGAGCTGTAAATATCAACGTTCATTTTGGTTCGAAGGCATTTATCGATATAACATCTCATCTTCTGTCTATCCTTCGAACATTCCTGTAAATTACCAATTGTCAACAGTAATAAATGGGGGGTCTTTTTACAGGCACATTTTTGCCAAGTAGAGAACTGTATTTTcattacttaaaaaaaataagataTTTTCTGTCTTTCGGTGTATTATACAACACTTTTCTGTTCAGTTTGATACAAATAAATGGTCAACTATTAAAAATATTTagtcaaataaaaaattaaaaaatcattGGGACCAGAAATTGCACTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949850 lncRNA downstream 4168 5362420 ~ 5448780 (-) True G1703315
TU1949849 lncRNA downstream 4461 5361761 ~ 5448487 (-) True G1703314
TU1949858 lncRNA downstream 22059 5429468 ~ 5430889 (-) False G1703323
TU1949851 lncRNA downstream 83404 5369094 ~ 5369544 (-) True G1703316
TU1949848 lncRNA downstream 91728 5360596 ~ 5361220 (-) True G1703313
TU1949866 lncRNA upstream 10458 5466569 ~ 5467856 (-) True G1703330
TU1949871 lncRNA upstream 25750 5481861 ~ 5482386 (-) True G1703334
TU1950203 lncRNA upstream 43606 5499717 ~ 5500536 (-) True G1703550
TU1950263 lncRNA upstream 127046 5583157 ~ 5585446 (-) True G1703573
TU1950267 lncRNA upstream 127500 5583611 ~ 5586059 (-) False G1703574
XM_036956675.1 mRNA downstream 695 5435276 ~ 5452253 (-) True LOC110491894
XR_005038474.1 mRNA downstream 3020 5448937 ~ 5449928 (-) False LOC118942838
XR_005038473.1 mRNA downstream 3239 5443959 ~ 5449709 (-) False LOC118942838
XR_005038471.1 mRNA downstream 3239 5448937 ~ 5449709 (-) False LOC118942838
XR_005038472.1 mRNA downstream 3239 5448951 ~ 5449709 (-) True LOC118942838
XM_036956676.1 mRNA upstream 22334 5478445 ~ 5480894 (-) False vhll
XM_036956677.1 mRNA upstream 22334 5478445 ~ 5480899 (-) True vhll
XM_036956678.1 mRNA upstream 40108 5496219 ~ 5561423 (-) True LOC110511232
XR_005038479.1 mRNA upstream 228351 5684462 ~ 5686216 (-) False LOC118942840
XM_036956686.1 mRNA upstream 231834 5687945 ~ 5822290 (-) True LOC118942841
TU1949859 other downstream 22776 5429468 ~ 5430172 (-) True G1703323
TU1949830 other downstream 26356 5420336 ~ 5426592 (-) True LOC118942837
TU1949704 other downstream 139975 5237408 ~ 5312973 (-) True LOC118942834
TU1949706 other downstream 217723 5232635 ~ 5235225 (-) True G1703200
TU1949687 other downstream 250891 5200827 ~ 5202057 (-) True G1703190
TU1950407 other upstream 443231 5899342 ~ 5899781 (-) True G1703658
TU1950464 other upstream 493923 5950034 ~ 5963423 (-) False LOC118942843
TU1950429 other upstream 535587 5991698 ~ 5996426 (-) True G1703669
TU1950752 other upstream 849442 6305553 ~ 6308220 (-) False G1703878
TU1950753 other upstream 849442 6305553 ~ 6308220 (-) False G1703878

Expression Profile