RNA id: XM_036956676.1



Basic Information


Item Value
RNA id XM_036956676.1
length 873
RNA type mRNA
GC content 0.46
exon number 3
gene id vhll
representative False

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5478445 ~ 5480899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTGGTTTAGGGAATGACATCGTCGTGGCATTCTGAGTGTCACTGTCGTCATGGAGGAGCAGGAAGTAGTGAGCGGGGAAAATAAAGCTCTCCGGTCTCTAAATGCTGATGTCGAAACCCACGTTAATTTTATTAATCAGTCGAAACAAAGCGCCCGAGCATGGTGGTTGGATTATTCCGGACATCCAGTTTCTTATGGCGATATACGAACGGACGGGTTGTTACGTATGGATACTTTTCTGACGCATCCATGGGTTTTCAGAGCCTCTCGAAATGGGGCGAAACTTTTAGCTAATCAGCAAGATGTTTATATGCCAACAGCTGCCACCGAATATGAAGAGGATGGTAAACCCAAGTTTCTGAATGTTGTCATAGCTACCCCAGtgtACTCTCTGCAGGAGTGTTGTCTGATGCTAATCCGTAATCTGGTAGAAGAGGAGGACTACGGCAGACTGGACATCCCCGAGTCACTGAAGACTGACCTCAGACAACGGCCTGACTTACTGAAGGAGCTGGGACTCATCAACCGTCTCAGAATAGGAGTGTTGACCTAGGATCAGTTGTATcgtttagatcacaatgaatcagattacatggacaggggggggggggtgacctgatcctagatcagctctcaTACTCTGAGAAGCTTTATGCATAACAGGCCACTGAATAATGGACTTTCTGTTGACCAAatgtactgcccccccccccccccctcctgctctGAACTCGGTGGTGGCTCTAGAACAGTGGAAGTCAATGTCAGGTTCGGGGAACTGCAGTAGGGTCGCGAATTAAAAGTACTTATTATTATAAAGAGTACATATTATTGTATGGgacaaaaaataaaacaaatgtaaataaataaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1949866 lncRNA downstream 10589 5466569 ~ 5467856 (-) True G1703330
TU1949850 lncRNA downstream 29665 5362420 ~ 5448780 (-) True G1703315
TU1949849 lncRNA downstream 29958 5361761 ~ 5448487 (-) True G1703314
TU1949858 lncRNA downstream 47556 5429468 ~ 5430889 (-) False G1703323
TU1949851 lncRNA downstream 108901 5369094 ~ 5369544 (-) True G1703316
TU1949871 lncRNA upstream 967 5481861 ~ 5482386 (-) True G1703334
TU1950203 lncRNA upstream 18823 5499717 ~ 5500536 (-) True G1703550
TU1950263 lncRNA upstream 102263 5583157 ~ 5585446 (-) True G1703573
TU1950267 lncRNA upstream 102717 5583611 ~ 5586059 (-) False G1703574
TU1950264 lncRNA upstream 104633 5585527 ~ 5586059 (-) True G1703574
XM_021565712.2 mRNA downstream 22090 5452970 ~ 5456355 (-) False LOC110491889
XM_036956675.1 mRNA downstream 26192 5435276 ~ 5452253 (-) True LOC110491894
XR_005038474.1 mRNA downstream 28517 5448937 ~ 5449928 (-) False LOC118942838
XR_005038473.1 mRNA downstream 28736 5443959 ~ 5449709 (-) False LOC118942838
XR_005038471.1 mRNA downstream 28736 5448937 ~ 5449709 (-) False LOC118942838
XM_036956678.1 mRNA upstream 15325 5496219 ~ 5561423 (-) True LOC110511232
XR_005038479.1 mRNA upstream 203568 5684462 ~ 5686216 (-) False LOC118942840
XM_036956686.1 mRNA upstream 207051 5687945 ~ 5822290 (-) True LOC118942841
XR_005038480.1 mRNA upstream 469976 5950870 ~ 5951611 (-) False LOC118942843
XR_005038481.1 mRNA upstream 469976 5950870 ~ 5951611 (-) False LOC118942843
TU1949828 other downstream 22334 5452948 ~ 5456111 (-) True LOC110491889
TU1949859 other downstream 48273 5429468 ~ 5430172 (-) True G1703323
TU1949830 other downstream 51853 5420336 ~ 5426592 (-) True LOC118942837
TU1949704 other downstream 165472 5237408 ~ 5312973 (-) True LOC118942834
TU1949706 other downstream 243220 5232635 ~ 5235225 (-) True G1703200
TU1950407 other upstream 418448 5899342 ~ 5899781 (-) True G1703658
TU1950464 other upstream 469140 5950034 ~ 5963423 (-) False LOC118942843
TU1950429 other upstream 510804 5991698 ~ 5996426 (-) True G1703669
TU1950752 other upstream 824659 6305553 ~ 6308220 (-) False G1703878
TU1950753 other upstream 824659 6305553 ~ 6308220 (-) False G1703878

Expression Profile