RNA id: XM_036956679.1


Basic Information

Item Value
RNA id XM_036956679.1
length 4386
RNA type mRNA
GC content 0.56
exon number 11
gene id LOC110511233
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5563222 ~ 5598052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTACAGCTTTGAGTTTTTTCCCCCCCCTCCGAGTAAAGATGGCGACGGCGCAGCTAACGGACGATGAGCTTTTCTCTGAGTTAAAGAGCTTTGGATTCACTCCAGGCCCGGTCTCCGAGAATACGAGACCGGTTTATTTGAAAAAACTAAAGAAACTACGTGAGGAACAACAACAGAAAGGAGGAACCAGAGCggggaaaaaccgaaacagcggCAGTATCAACAACAACAGTAGTAGCGGTGGTAACGGCAGCTACACAGCGGCGGGAGCTTCGGGATGCGGAGCCAGGCCAGCTAGCCGTGACGTCACGCCCCGGAGCCCCGGTGGTCGACCGGTCCTGAACGAAAAGCGAACTGGTGGAGCGGGGAAGTTCGTATTGGGTTTTAGTTCGGACGAATCGGACGTAGAGGACCCGAAGAAAAAACGAGGAGCGAACCACAGCGGTAGGAGAGACCGAGGTTCCGCGTATCAACAACAACCGATCAGGCCTACAACGGGAGCTGCTACCGCCACTCGGAAGAGCCTGGGAGTCGCTGTGAGTACCAGCAGTAACAACTCCTCTCCCGCCGGGCTGCTGGAGGGGAGGAGAAGCGGAACCGGTTCTCTCAGTTGGGTGGACCGGGGAAAATCGAGCCTCGAGGTCTCGCGGGCCGCGGAAGTGAAGTGTTACGACGAAGAGCCCGAAGAAGACGACGATTTTCaaggggagacggagagagacagtcGGTCTCTGAATGGGAACAGGGCGTCTTACTCACTGAACGCCAGTAGTAAGAAAGTCGGTGATTACTCAGATtcggaggaagaggaagaagggggGATAATATCTGGGCAGGACCGTCAACGAGACCGGCGTACACAGGAACACTACTCCAGACGGAGTCACTCCTCCAAGCCGTCGCCCTACAGAAGTGCCAGGGGGTCAGAGAGCGGACAGGAAACCACTGGCGGCATGGCAATCAGGCTAAACGACACGCCTGGCGCTAGTAGGAGTCGACTAGACATGATGGGAGGccggggggaggaggaagaggaggaggaggaggaagagggaaagaaACGAGGCCCCGGCGAATCGTCCCTGAGCGGGAGCTTGCTGCGACGCCATTGCCCCAGGGGGACCATCTACGTGTCGGCTTTGATGGGGGAGAGCGACCGCGGCAGCCCCGGGGAAAGCAGCGGCAACAATTCCCCGTCCTCCGCCTACAACAAAAACCACATCGACAGCGGGGATGGcgccaccagcagcagcagccgaTTCAACATCGGCCTGAGACCGCGATTCTCCAACTACAACAGTCTATCCGCTACTTACCGACCCAACCATTCAAATCATAGCGGTCCCAACCATGCCTACAGCCAGTCGAGTCTCAAGCAGAAGCACACGGTACCGGAGGATGAGCTGCTCCAGCAATTCAAGCGGGAGGAGGTGGGGTCGTCCACCGGTGGTTGGGGGTTCAGTGCCCACTACCTGTCCATGTTCCTGCTCATGGCCGCCTGCCTGTTCTTCCTCCTGCTCGGCCTCATGTATCTCCGGATGAGGGGGTCTGGAGCCTCTGAGGTCGATGTTGTCGTTAAGAACCACCCGTTTGGCAGCGAGTTTGACAGTTCTTATGACAAGACGGAGAAGGACACCATTCTGAAACTCCTCCTCAACCTTCACGACCACCTGGCTCATATTGCTGGCCAACATGACTGTACCGCCCCGGAGCAGCATCAGGCCAACAGGAGTCTGTCTCTGAAGGAAGCCTCTGACTATCTCCTGCAGCAGAATGAACAGTACCGTCACTGGGTTCTCCTCGCTCTGGAGTGGATCATACGGACGGGGGAGGACGTTGGCATACGgctgatCGGGGATAACCCAGAGGAGGCAGTAGCGGATGTGAGTGAGGTGACTCGTCTGGAGTCGACCCACCCCAAGATGTCCTTCTCCTGCCGCTTCAGAAGAGCCTTTTTCACAGTCATCCACAGGGTGCTGCTCATCCTAACAGtgattggtctggtgtgggctgtatTCTACTACATGAAGTATCgttggaggagagaggaagaggagacccGGCAGATGTATGACATGGTGGAAAGAATCATAGGTGTTCTGAGGATCCACAACGCATCGTGTCAGGAGAACAATGACCTCCAGCCCTACCTGCCCATCCCTCACGTCAGAGACTCCCTGGTTCAGCCCCAGGACAGAAAGAAGCTGAAGAAGGTCTGGGACCGGGCTGTGACCTTCCTCTCAGCCAATGAGAGCCGTATCAGGACAGAGTCTCAGCGGATTGGCGGAGCCGACTTCCTGGTGTGGAGGTGGCTCCAGCCCTCTCTGAGCTGCGACCAGATCTCACTCGTCCCCTCCAAAGTCTGGCAGGGCAAAGcgTTCCCTCTGGACAGGAGGAACTCTCCTCCCAACAGTTTAACGGCGTGTCTGAAGATCAGAAACATGTTTGATCCAGTCATggaGGTTGGTGAAAACTGGCATCTGGCCATCCACGAGGCCATCTTGGAGAAGTGTTGTGACAACGACGGTATCGTCCACATCGCTGTCGACAAGAACTCCAGAGAGggctgTGTCTATGTGAAGTGTCTGTCAGCAGAACACTCAGGGAAAGCCTTCAAGGCGCTACATGGCTCCTGGTTCGATGGTAAGCTGGTGACGGTGAAGTACCTGCGTCTGGACCGTTACCACCAGCGTTTCCCTCAGGCCCAGGGCTGTACCACCTCCCTGAAGCCCTCAAACACCTACATGAACACCATGTCCAGACTACGTCACCACACCAGCCCTGACAGCAGCTCTAACACGAACTCTCTAGGCTTCTCttgaaggggggggggcagattaccccagcctcctctctccctccctcaaccccaCAGATACCACCACACCAGCCCTGACAGCAGCTCTAACACTAACTCTCTAGGCTTCtcctgagggggagggggggggggtagattaccccagcctcctctctccctcaacccCACCACACCAGCCCTGACAGCCCCTTCTTACCCCTGTGTAACGGTCTCACCTCAACACAAGCCCCCCTTCCTTCAGGCTCCCCTTAACAAGCCTCTACTGGAGGTGATGGCAGCTTGGTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCACAGGGCTGGGTTGAACCGTCTGTCTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTGGGTTGAACCGTCTGTCTCACAGGGCTGGGTTGAACCGTCTGTCTCGACTCACAGGGCTGGGTTGAACCGTCTGTCTCAACTCACAGGGCTTTGTTTTCTCTTTTAAGTGGGACTTGACTGTTGGTTGTCCACAACCTGTCTGGACCACAGGAGTGGTGGGAGGCTTTAGACTGACAGTCCTGCAGTGTTTTTTGTTGTAAAGACCAATCAGAGTTTTGAAAACAAAACTTTGGAAGACCACTTGAACAACCAATGGGCTGAGAGATTGGAGACTAGGGGGGGGGGGCGTGGTCTGAGCTGGAGATGTGTGACTAGGGGGGCGTGGTCTGAGCTGGAGATGTGTGATTCGCCGGTTCCCCCGTCGACactattaaaaacattattttttttttttttttgtattacaaACTTTATGGATTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949881 lncRNA upstream 60881 5501699 ~ 5502341 (+) False G1703338
TU1949880 lncRNA upstream 60881 5501967 ~ 5502341 (+) True G1703338
TU1949877 lncRNA upstream 62105 5499724 ~ 5501117 (+) False G1703337
TU1949876 lncRNA upstream 62396 5499110 ~ 5500826 (+) False G1703337
TU1949878 lncRNA upstream 62396 5499724 ~ 5500826 (+) True G1703337
TU1949955 lncRNA downstream 44184 5642236 ~ 5642693 (+) True G1703379
TU1949957 lncRNA downstream 44945 5642997 ~ 5644121 (+) True G1703381
TU1949910 lncRNA downstream 58135 5656187 ~ 5657179 (+) False LOC110519381
TU1949911 lncRNA downstream 58135 5656187 ~ 5657179 (+) True LOC110519381
TU1949977 lncRNA downstream 77691 5675743 ~ 5678147 (+) True G1703388
XM_036956674.1 mRNA upstream 90228 5457539 ~ 5472994 (+) True LOC110491886
XM_036956671.1 mRNA upstream 146664 5402208 ~ 5416558 (+) True LOC118942836
XM_036956670.1 mRNA upstream 212788 5340534 ~ 5350434 (+) False LOC118942835
XM_036956669.1 mRNA upstream 212788 5340535 ~ 5350434 (+) True LOC118942835
XM_036956654.1 mRNA upstream 363029 5183258 ~ 5200193 (+) False LOC110516940
XM_036956681.1 mRNA downstream 13834 5611886 ~ 5656587 (+) False LOC110519381
XM_036956682.1 mRNA downstream 13835 5611887 ~ 5656587 (+) False LOC110519381
XM_036956680.1 mRNA downstream 14070 5612122 ~ 5656587 (+) False LOC110519381
XR_005038478.1 mRNA downstream 14070 5612122 ~ 5656587 (+) False LOC110519381
XM_036956683.1 mRNA downstream 29717 5627769 ~ 5656587 (+) False LOC110519381
TU1949137 other upstream 308337 5254165 ~ 5254885 (+) False G1702856
TU1949138 other upstream 308337 5254165 ~ 5254885 (+) True G1702856
TU1948974 other upstream 374375 5184474 ~ 5188847 (+) True LOC110516940
TU1949056 other upstream 508758 5052447 ~ 5054464 (+) True G1702793
TU1948694 other upstream 1167707 4394993 ~ 4395515 (+) True G1702554
TU1949988 other downstream 119147 5717199 ~ 5717701 (+) True G1703391
TU1950048 other downstream 385293 5983345 ~ 5994810 (+) True G1703427
TU1950617 other downstream 630062 6228114 ~ 6252320 (+) False mrps33
TU1950618 other downstream 630062 6228114 ~ 6252320 (+) False mrps33
TU1950619 other downstream 630062 6228114 ~ 6252320 (+) False mrps33

Expression Profile