RNA id: XR_005038476.1


Basic Information

Item Value
RNA id XR_005038476.1
length 569
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC118942839
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5593681 ~ 5595397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGAACCAACAGCCATCTGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCACACGGTTATATATCCAGGTGGAACCAACAGCCATGTGGTTATATATCCACTGACCAGGTAGAACCAACAGCCATGTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCATGTGGTTATATATCCAGTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCACTGACCAGGTGGAACCAACAGCCATCTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCACGCGGTTATATATCCAGGTGGAACCAACAGCCATGTGGTTATATATCCACTGACCAGGTAGAACCAACAGCCATGTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCATGTGGTTATATATCCAGTGACCAGGTAGAACCAACAGCCATGTGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949943 lncRNA upstream 5556 5588630 ~ 5588927 (+) True G1703369
TU1949881 lncRNA upstream 92142 5501699 ~ 5502341 (+) False G1703338
TU1949880 lncRNA upstream 92142 5501967 ~ 5502341 (+) True G1703338
TU1949877 lncRNA upstream 93366 5499724 ~ 5501117 (+) False G1703337
TU1949955 lncRNA downstream 46839 5642236 ~ 5642693 (+) True G1703379
TU1949957 lncRNA downstream 47600 5642997 ~ 5644121 (+) True G1703381
TU1949910 lncRNA downstream 60790 5656187 ~ 5657179 (+) False LOC110519381
TU1949911 lncRNA downstream 60790 5656187 ~ 5657179 (+) True LOC110519381
TU1949977 lncRNA downstream 80346 5675743 ~ 5678147 (+) True G1703388
XM_036956674.1 mRNA upstream 121489 5457539 ~ 5472994 (+) True LOC110491886
XM_036956671.1 mRNA upstream 177925 5402208 ~ 5416558 (+) True LOC118942836
XM_036956670.1 mRNA upstream 244049 5340534 ~ 5350434 (+) False LOC118942835
XM_036956669.1 mRNA upstream 244049 5340535 ~ 5350434 (+) True LOC118942835
XM_036956652.1 mRNA upstream 394290 5184403 ~ 5200193 (+) False LOC110516940
XM_036956681.1 mRNA downstream 16489 5611886 ~ 5656587 (+) False LOC110519381
XM_036956682.1 mRNA downstream 16490 5611887 ~ 5656587 (+) False LOC110519381
XM_036956680.1 mRNA downstream 16725 5612122 ~ 5656587 (+) False LOC110519381
XR_005038478.1 mRNA downstream 16725 5612122 ~ 5656587 (+) False LOC110519381
XM_036956683.1 mRNA downstream 32372 5627769 ~ 5656587 (+) False LOC110519381
TU1949137 other upstream 339598 5254165 ~ 5254885 (+) False G1702856
TU1949138 other upstream 339598 5254165 ~ 5254885 (+) True G1702856
TU1948974 other upstream 405636 5184474 ~ 5188847 (+) True LOC110516940
TU1949056 other upstream 540019 5052447 ~ 5054464 (+) True G1702793
TU1948694 other upstream 1198968 4394993 ~ 4395515 (+) True G1702554
TU1949988 other downstream 121802 5717199 ~ 5717701 (+) True G1703391
TU1950048 other downstream 387948 5983345 ~ 5994810 (+) True G1703427
TU1950617 other downstream 632717 6228114 ~ 6252320 (+) False mrps33
TU1950618 other downstream 632717 6228114 ~ 6252320 (+) False mrps33
TU1950619 other downstream 632717 6228114 ~ 6252320 (+) False mrps33

Expression Profile