RNA id: XM_036956682.1


Basic Information

Item Value
RNA id XM_036956682.1
length 1517
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC110519381
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5611886 ~ 5657179 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTCCACAGTAGACATTTCCCACTATAGTGCCAAGCTGCAAAGTCGAAATTGGCACAAATCGTGAAAATGTATGAAGACGTCAATTCGCTTTTTGCTCTTCATTTAAGAGTAGGTCAGACACACGTTTAGGAGTATGGTTAATGTTAAGCGTCGGTTTTGAAATCCGATTTTtaaagaagataaattgtagaactTCCGGGTTTTGCAGCTTGGCCATATAGTGACAACCCCTCAGACAGGCCAGCGGTGTGTTGTCCGTTTCTCTCGTCTCACTGAGTTGTGTTCACAGCTAATGCACGGACACGGACCGGACCGCCCGTCTGCCAGTGGGTTGACCATCTGCGTTACTTTGTTGTCCCTGCTACTTTTTACAGcctgagTAGCATAGccccccatccctccctacatccctccctcctagACAAGGTGTGTCAGTCGGgcgtgtcctctctctctctctcctccaatcagcAAACAGGAGCAGCCAATCAGAAGCAGCCATGTCGGGGTTCAATCTGCTACACCTGATCACCAATGCCAAGCCTGTTACTCTGAAGCCATGTGGGCTCCCTTCAGGAACCTGCCGGACCAAGAAGACATGGCCCAAGTCCTTCTCTCAGGAGGAGCTGAAGAAACGTCTCTCCCCCATTCAGTTCCATGTCACCCAGGAGAAAGGAACAGAGAgTGCCTTCAGAGGGGAATACACTGAATATAAAGAGGATGGCATCTACACCTGTGTCGTCTGTGGCTCCCCGCTGTTCAAGTCCGAGACCAAGTTTGACTCTGGATCAGGTTGGCCTTCCTTCTATGACCTGGTAAAGGAGGAGTCAGTCACTGTAACAGACGATTTCGCCTACGGGATGCACAGAGTTGAGACCAGCTGTAGTCAGtgtggttCTCACCTCGGACACCTGTTTGATGACGGCCCCAGACCCACAGGGAAACGATACTGCATCAACTCTGCCTCTCTGGGCTTCCAGTCCGCCTCAGCCTCTAGGCCACCCAGCAACGGagatggggctggggctgggacaggagctggggctgggacaggggctggggctgggacaggggctggggctgggacaggggctAGGGATGGGGCTGGTGGTGCGGTTGGGGGCAAGACTGAGCTCTGAGTAAAAGGTCTCCTTGGTCTTGGACAGATTTCAGGAATACAGGAAGTACAGGCACGGTCACTCACTCCTTATCCAAACTGGTGGCCTAGGTCCTGGTCGAAATGTTacgaacagaacagagaacagctGGAGAATATAGGTTACACAGAACCCGGAAACATTCAGCCAACTAGGTTACACAGATCCGAAAACGGTCAGACAACTAGGTTACACAGAACCCGAAAACAGTCAGACAACTACAGTCAGCTCAATAAGGGGCCATCGTCACCCCTTAGAAAACATGTGGAACATGATGCCTCTTCTGTGCTCATGTAGGttacacacacccaaacacagtCGGTCAAACACAGTCCGTCAAATGACCCCAGTGGCCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949917 lncRNA upstream 10194 5554243 ~ 5601693 (+) True G1703353
TU1949943 lncRNA upstream 22960 5588630 ~ 5588927 (+) True G1703369
TU1949881 lncRNA upstream 109546 5501699 ~ 5502341 (+) False G1703338
TU1949880 lncRNA upstream 109546 5501967 ~ 5502341 (+) True G1703338
TU1949877 lncRNA upstream 110770 5499724 ~ 5501117 (+) False G1703337
TU1949977 lncRNA downstream 19156 5675743 ~ 5678147 (+) True G1703388
TU1949985 lncRNA downstream 23479 5680066 ~ 5719953 (+) True G1703389
TU1950000 lncRNA downstream 56046 5712633 ~ 5714065 (+) True G1703401
TU1949962 lncRNA downstream 79237 5735824 ~ 5740334 (+) False G1703386
TU1949971 lncRNA downstream 82454 5739041 ~ 5740334 (+) True G1703386
XM_036956679.1 mRNA upstream 13835 5563222 ~ 5598052 (+) False LOC110511233
XR_005038475.1 mRNA upstream 16490 5593681 ~ 5595397 (+) False LOC118942839
XR_005038477.1 mRNA upstream 16490 5594467 ~ 5595397 (+) False LOC118942839
XR_005038476.1 mRNA upstream 16490 5594483 ~ 5595397 (+) True LOC118942839
XM_036956674.1 mRNA upstream 138893 5457539 ~ 5472994 (+) True LOC110491886
XM_036956685.1 mRNA downstream 208703 5865290 ~ 5877708 (+) False LOC118936346
XM_036956684.1 mRNA downstream 208703 5865290 ~ 5879291 (+) False LOC118936346
XM_036956690.1 mRNA downstream 322764 5979351 ~ 5986641 (+) False LOC118942842
XM_036956691.1 mRNA downstream 322812 5979399 ~ 5986641 (+) False LOC118942842
XM_036956689.1 mRNA downstream 322820 5979407 ~ 5986641 (+) False LOC118942842
TU1949920 other upstream 15459 5585531 ~ 5596428 (+) True LOC110511233
TU1949137 other upstream 357002 5254165 ~ 5254885 (+) False G1702856
TU1949138 other upstream 357002 5254165 ~ 5254885 (+) True G1702856
TU1948974 other upstream 423040 5184474 ~ 5188847 (+) True LOC110516940
TU1949056 other upstream 557423 5052447 ~ 5054464 (+) True G1702793
TU1949988 other downstream 60612 5717199 ~ 5717701 (+) True G1703391
TU1950048 other downstream 326758 5983345 ~ 5994810 (+) True G1703427
TU1950617 other downstream 571527 6228114 ~ 6252320 (+) False mrps33
TU1950618 other downstream 571527 6228114 ~ 6252320 (+) False mrps33
TU1950619 other downstream 571527 6228114 ~ 6252320 (+) False mrps33

Expression Profile