RNA id: TU1950324


Basic Information

Item Value
RNA id TU1950324
length 2218
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id LOC118942840
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5652498 ~ 5686229 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTTGGGGTTTTTGTATATTGTATTCGTGGATTTGGTTTTTGTTAATTAGTAGATATTGATATACTTGATTAGTTATTTTGTGTACTTTTACGACACGTGATTTTCTCTTTCTTGTTGTTATGGTTCAACCAGATGTATACGAAAATGCTTCTTTAAGTAGTGATGGGTTACAACTTTTAAATGTTAACATGGTATATTCTCACACGGGCCTGAGGTAGGGAGCCTCAGAGAGTTAGTCAAACAACCCAACATGCCCTTTCCACTCACACGGGCCTGAGGTAGGGAGCCTCAGAGAGTTAGTCAAACAACCCAACATGCCCTTTCCACTCACACGGGCCTGAGGTAGGGAGCCTCAGAGAGTTAGTCAAACAACCCAACATGCCCTTTCCACTCACACGGGTCTGAGGTAGGGAGCCTCAGAGAGTTAGTCAAACAACCCAACATGCCCTTTCCACTCACACGGGCCTGAGGTAGGGAGCCTCAGAGAGTTAGTCAAACAACCCAACATGCCCTTTCCACTCACACAGGTCTGCAAGCTGCAATTCAAACTTGACATCAGTCAGTTTTAAGCTGCTTTCATGTGCTCTCTGAATTATATTGATACTTCTGAGTTTCTCAGTTGAATACTTCAGAGTTTCTCAGTTTGAGACTTCCGAGTTTCTCAATTTGAGACTTCCGAGTTTCTCAGTCGAATACTTCAGAGTTTCTCAGTTTGAGACTTCCGAGTTTCTCAGTCGAATACTTCCGAGTTTCTCAGTCGGATACTTCCGAGTTTCTCAGTCGGAGACTTACGAGTTTCTCAGTCAAATACTTCCGAGTTTCTCTGTCGGATACTTCCGAGTTTCTCAGTTTGAGACTTCCGAGTTTCTCAGTCGGATACTTCCGAGTTTCTCAGTCGGATACTTCTGAGTTTCTCAGTCGGAGACTTCCGAGTTTCTCAGTCGGAGACTTCCGAGTGTCTCAGTCGGAGACTTCCGAGTTTCTCAGTCGGAGACTTCCGAGTTTCTCAGTCGGAGACTTCCGAGTGTCTCAGTCGGAGACTTCCGAGTGTCTCAGTCAGAGACTTCCGAGTGTCTCAGTCAGAGACTTCCGAGTGTCTCAGTCGGAGACTTCCGAGTTTTCCAGTCGAATACTTCCGAGTTTCTCAGTCGGAGACTTCCGAGTCTCTCAGTCGGATAGTTCCGAGTGTCTCAGTCGGAGACTTCCGAGTGTCTCAGTCGGAGACTTCCGAGTGTCTCAGTCGGAGACTTCCGAATTTTTCAGTCAAATACTTCCGAGTTTCTCAGTCGAATACTTCTGAGTGTCTCAGTCGGAGACTTCCGAGTGTCTCAGTCGGAGACTTCCGAGTGTCTCAGTCGGAGACTTCCGAGTGTCTCAGTCAGAGACTTCCGAGTGTCTCAGTCGGAGACTTCCGAGTTTTTCAGTCGAATACTTCCGAGTTTCTCAGTCAAATACTTCCGAGTTTCTCAGTCGGAGACTTCCGAGTCTCTCAGTCGGATAGTTGCGAGTTACTCAGTAGGATACTTCCAAGTTTCTCAGTTGGATACTTGCAAGTTTCTCAGTCGGATACTTCAGAGTTTCTCAGTTTGAGACTTCCGAGTTTCTCAGTCGGATACTTCCGAGTTTCTCAGTCGGAGACTTCCGAGTGTCTCAGTCGGAGACTTCCGAGTTTCTCAGTCGGAGACTTCCGAGTTTTTCAGTCGAATACTTCCGAGTGTCTCAGTCGAATACTTCCGAGTTTCTCAGTCGAATACTTCCGAGTTTCTCAGTCAGATGCATACTTCAGAATTTCCTATTTTCCTGAGGAAGGCAGCATTAGTTTCTTCACACACTATTACTGTCCAGAATGTTCCCTGAACTGTATCATTGGGTGGGTTCATCTGTCATAACAACTCTTGATAACTCTCAGGTACATAACAATCAAAACAGAGAGCGTAGGTTGATCAAGAACAAACCTATTGTTGACGAGGTGAAGTCATAGTGGGCCTATGCTTTATGTCGACGCCGTTTGACAGCTGCCTTGGTTTTGAAACGGCTTCGTAGGGCCTACCTGTGTGAGTTGGTCGATCACATGTTGTAGCTTTGAAAAGCACGGCCTAGAAACAGATAGACTTCACGGCTGAGAAGAACAATGGCTTTGTCTAAATACGCCACAAGCAGGTTAAAAATCCTTTGCTTACTGCTTCCTCGTTGCCGTAATTCCTCTCAAAGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950331 lncRNA downstream 4878 5674649 ~ 5675362 (-) True G1703600
TU1950307 lncRNA downstream 13198 5656186 ~ 5667042 (-) True G1703588
TU1950306 lncRNA downstream 22420 5655963 ~ 5657820 (-) False G1703588
TU1950296 lncRNA downstream 22420 5656186 ~ 5657820 (-) False G1703588
TU1950297 lncRNA downstream 22420 5656186 ~ 5657820 (-) False G1703588
TU1950342 lncRNA upstream 9187 5693001 ~ 5710044 (-) False G1703605
TU1950344 lncRNA upstream 13318 5697132 ~ 5710044 (-) False G1703605
TU1950346 lncRNA upstream 13318 5697132 ~ 5705311 (-) True G1703605
TU1950356 lncRNA upstream 41794 5725608 ~ 5728468 (-) True G1703614
TU1950366 lncRNA upstream 66176 5749990 ~ 5751282 (-) True G1703619
XM_036956678.1 mRNA downstream 118817 5496219 ~ 5561423 (-) True LOC110511232
XM_036956677.1 mRNA downstream 199341 5478445 ~ 5480899 (-) True vhll
XM_036956676.1 mRNA downstream 199346 5478445 ~ 5480894 (-) False vhll
XM_021565712.2 mRNA downstream 223885 5452970 ~ 5456355 (-) False LOC110491889
XR_005038472.1 mRNA downstream 230531 5448951 ~ 5449709 (-) True LOC118942838
XR_005038479.1 mRNA upstream 648 5684462 ~ 5686216 (-) False LOC118942840
XM_036956686.1 mRNA upstream 4131 5687945 ~ 5822290 (-) True LOC118942841
XR_005038480.1 mRNA upstream 267056 5950870 ~ 5951611 (-) False LOC118942843
XR_005038481.1 mRNA upstream 267056 5950870 ~ 5951611 (-) False LOC118942843
XR_005038482.1 mRNA upstream 267056 5950870 ~ 5951611 (-) False LOC118942843
TU1949828 other downstream 224129 5452948 ~ 5456111 (-) True LOC110491889
TU1949859 other downstream 250068 5429468 ~ 5430172 (-) True G1703323
TU1949830 other downstream 253648 5420336 ~ 5426592 (-) True LOC118942837
TU1949704 other downstream 367267 5237408 ~ 5312973 (-) True LOC118942834
TU1949706 other downstream 445015 5232635 ~ 5235225 (-) True G1703200
TU1950407 other upstream 215528 5899342 ~ 5899781 (-) True G1703658
TU1950464 other upstream 266220 5950034 ~ 5963423 (-) False LOC118942843
TU1950429 other upstream 307884 5991698 ~ 5996426 (-) True G1703669
TU1950752 other upstream 621739 6305553 ~ 6308220 (-) False G1703878
TU1950753 other upstream 621739 6305553 ~ 6308220 (-) False G1703878

Expression Profile