RNA id: TU1950028


Basic Information

Item Value
RNA id TU1950028
length 871
lncRNA type sense_over
GC content 0.41
exon number 3
gene id LOC118936346
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5865290 ~ 5879297 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGAGCCCTCGCCTCTTTAGACTGGGGGCTAGTAGCCTGCTGGCTGACATAgagagacagATCTACCATCACGTGACTGGTCGCTACGCAGCCTATCACCAGATGCCCATGGCCTGAAACCACGGTTACCATTTCCAAAGTGACCAATCCGAAACCTCACCCGAACCAGCCTATCGCTGTGCAGGTTTCTTACAGGTTTCCTGGAAGATATCTCTGTTGTTGGACTTGTCAGGAATGTGTTCATTTGAGATGATGACCAGATCAGGTGAAGAAAAGAGAGAGCCTGACGttttactgtgtacagtactactggtatatctggcgttttactgtgtacagtactactggtatatctggcgttttactgtgtacagtactactggtatatctggcgttttactgtgtacagtactactggtatatctgatattttactgtgtacagtactactggtatatctgatattttactgtgtacagtactactAGTATATCTGACATtatactgtgtacagtactactAGTATATATGTCATTTTACTGTGTACCAGACATACAGTACTACTGGTACATCTGCCTCTTTGTGCCTTGAGACAGCTAGCCAGTATGGTTTCATCTAGTCCCCATCCAAACAATGTGAAACTATGACGCTGTATGAATTGAGTGTTGATGAGTCCGTCTTAATGAACCATTTTAAAATTGTAGTTGTTTTGAGAGTACTATATTATAGACGATATAAAACTCTTAATTCAGTATTTCTATTACCGTTGTCGTTGTCATGAAAGATTGCCACCCATTCTAATCATGTCTGTCTGGACATTTTGTTGGGAGATGTTGAAGTGTGATTAAAGACCATCAAACATTATGGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950071 lncRNA upstream 15110 5862584 ~ 5862837 (+) True G1703445
TU1950070 lncRNA upstream 16578 5861153 ~ 5861369 (+) True G1703444
TU1950069 lncRNA upstream 20462 5857158 ~ 5857485 (+) True G1703443
TU1950067 lncRNA upstream 25531 5852183 ~ 5852416 (+) True G1703441
TU1950064 lncRNA upstream 32901 5844773 ~ 5845046 (+) True G1703438
TU1950055 lncRNA downstream 1574 5880871 ~ 5881532 (+) True G1703429
TU1950075 lncRNA downstream 9247 5888544 ~ 5888806 (+) True G1703449
TU1950077 lncRNA downstream 17916 5897213 ~ 5897529 (+) True G1703451
TU1950082 lncRNA downstream 30658 5909955 ~ 5910256 (+) True G1703456
TU1950083 lncRNA downstream 33921 5913218 ~ 5913629 (+) True G1703457
XM_036956685.1 mRNA upstream 239 5865290 ~ 5877708 (+) False LOC118936346
XM_036956682.1 mRNA upstream 221360 5611887 ~ 5656587 (+) False LOC110519381
XM_036956690.1 mRNA downstream 100054 5979351 ~ 5986641 (+) False LOC118942842
XM_036956691.1 mRNA downstream 100102 5979399 ~ 5986641 (+) False LOC118942842
XM_036956689.1 mRNA downstream 100110 5979407 ~ 5986641 (+) False LOC118942842
XM_036956692.1 mRNA downstream 100114 5979411 ~ 5986641 (+) False LOC118942842
XM_036956693.1 mRNA downstream 100140 5979437 ~ 5986641 (+) True LOC118942842
TU1949988 other upstream 160246 5717199 ~ 5717701 (+) True G1703391
TU1949920 other upstream 281519 5585531 ~ 5596428 (+) True LOC110511233
TU1949137 other upstream 623062 5254165 ~ 5254885 (+) False G1702856
TU1949138 other upstream 623062 5254165 ~ 5254885 (+) True G1702856
TU1948974 other upstream 689100 5184474 ~ 5188847 (+) True LOC110516940
TU1950048 other downstream 104048 5983345 ~ 5994810 (+) True G1703427
TU1950617 other downstream 348817 6228114 ~ 6252320 (+) False mrps33
TU1950618 other downstream 348817 6228114 ~ 6252320 (+) False mrps33
TU1950619 other downstream 348817 6228114 ~ 6252320 (+) False mrps33
TU1950620 other downstream 348817 6228114 ~ 6252320 (+) False mrps33

Expression Profile