RNA id: TU1950464


Basic Information

Item Value
RNA id TU1950464
length 1451
RNA type TUCP
GC content 0.45
exon number 5
gene id LOC118942843
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5950034 ~ 5963423 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgccttttactgaggagtggcatccgtctggcctctctaccataaaggcctaattggtggagtgctgcagagatggttctccttctggaaggttctcccatctcctcagaggaactctggagctctgtcagagtgaccatctggttctttgtcacctccctgaccaaggcccttctcccccgattgctcagtttggccgggcgaccagctataggaagagtcttcgtggttccaaacttcttccatttaagaatgatggaggccactgtgatcttgggaaccttcaatgctgaagaaatgttttggtgtccttccccagatctgtgcctcgacacaatcctgtctcggagctctacggacaattcctcggacatcatggcttgattttgctctgacatgcactgtcaactgtgggaccttacaggtgtgtgcctttccaaatcatgtccaatcaattgaatttaccacaggtggactccaatcaagttgtagtatgtaaataagatatttttgttttctatttttaataaatttgctgcgtcattatggggtattgtgatgtcattatggggtattgtgatgtcattatggggtattgtgatgtcattatggggtattgtgtatagattgatgagggaaaatgttttaattaatcaattttagaataaggctgtaacataacaaaatatggtacatgtcaaaggggtctgaatacttgtccGAATGCCTCGTATATTCCTCTCCTATGTACTGGATGTGTCAATAAGATAACAAGATGGAAAGGaaggggaatagagagatggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATAACAAGATGGGaaggaggggaatagagagatggaggtgtggaggtgtgGTGTGATTCATGGATGTGTCAATAAGATAACAAGATGGAAAGGaaggggaatagagagatggaggtgtgGTGTGATTCACGGCCTGCTCAAAGAGCACCGAGTGGAATAATTGTTTCGCAATGGGAAATCTCGAAGGAGCCCCTCACACAACTCGTTGGAAGTGTTCAGAGGCTTTTGAATGCGAGTGCTGACATTGGAAGAACTCAAGGgcgtggaagggagggaggaagggagtaaATGGGGGGGATGAATGAAGAAAGATGGAGCCGAGGGAGGAAGGGAGTAAAGGTGGGGGGTGAATGATGAAAGATGGAGCTGCAGTGCATTCTCTTCAGACGTTATAAGCAGCGATAGCTGCTTTCAAGACTGAACGTTTGAGGGAATAAACGGACGGTGAGTCTTTTAACGTGTCAAGAACACCGGATTTTGCCAACTTCAGGAGATCGTTGTAAACCGAGACACTGGAAACTGCTAGAATATCAGCTAGATAAACCTAGCTGTTTCTTTGAGTAAGAACTAgtcgtgagagagagagagagagaggacaagacgagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950416 lncRNA downstream 37322 5912485 ~ 5912712 (-) True G1703667
TU1950415 lncRNA downstream 38671 5910985 ~ 5911363 (-) True G1703666
TU1950413 lncRNA downstream 41669 5907890 ~ 5908365 (-) True G1703664
TU1950411 lncRNA downstream 43109 5906617 ~ 5906925 (-) True G1703662
TU1950410 lncRNA downstream 43648 5906133 ~ 5906386 (-) True G1703661
TU1950473 lncRNA upstream 9943 5973366 ~ 5974885 (-) True G1703703
TU1950431 lncRNA upstream 16032 5979455 ~ 5983770 (-) False G1703670
TU1950474 lncRNA upstream 17452 5980875 ~ 5983010 (-) True G1703704
TU1950432 lncRNA upstream 19644 5983067 ~ 5984055 (-) True G1703670
TU1950424 lncRNA upstream 20942 5984365 ~ 5986645 (-) False G1703669
XM_036956686.1 mRNA downstream 127744 5687945 ~ 5822290 (-) True LOC118942841
XR_005038479.1 mRNA downstream 263818 5684462 ~ 5686216 (-) False LOC118942840
XM_036956678.1 mRNA downstream 388611 5496219 ~ 5561423 (-) True LOC110511232
XM_036956677.1 mRNA downstream 469135 5478445 ~ 5480899 (-) True vhll
XM_036956676.1 mRNA downstream 469140 5478445 ~ 5480894 (-) False vhll
XM_036956695.1 mRNA upstream 103712 6067135 ~ 6177614 (-) False LOC110499738
XM_036956694.1 mRNA upstream 103712 6067135 ~ 6183123 (-) False LOC110499738
XM_036956698.1 mRNA upstream 103712 6067135 ~ 6184666 (-) False LOC110499738
XM_036956697.1 mRNA upstream 103712 6067135 ~ 6187073 (-) False LOC110499738
XM_036956696.1 mRNA upstream 103712 6067135 ~ 6188810 (-) True LOC110499738
TU1950407 other downstream 50253 5899342 ~ 5899781 (-) True G1703658
TU1949828 other downstream 493923 5452948 ~ 5456111 (-) True LOC110491889
TU1949859 other downstream 519862 5429468 ~ 5430172 (-) True G1703323
TU1949830 other downstream 523442 5420336 ~ 5426592 (-) True LOC118942837
TU1949704 other downstream 637061 5237408 ~ 5312973 (-) True LOC118942834
TU1950429 other upstream 28275 5991698 ~ 5996426 (-) True G1703669
TU1950752 other upstream 342130 6305553 ~ 6308220 (-) False G1703878
TU1950753 other upstream 342130 6305553 ~ 6308220 (-) False G1703878
TU1950755 other upstream 342130 6305553 ~ 6308220 (-) False G1703878
TU1950757 other upstream 342130 6305553 ~ 6308220 (-) True G1703878

Expression Profile