RNA id: XM_036956690.1


Basic Information

Item Value
RNA id XM_036956690.1
length 2005
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC118942842
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5979351 ~ 5986641 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTTCAACCTGCCCTCAATTTCGCAACACCACATGTGGCCTCGGTCCAAGTGTCCCAGAAATTCAACAACGACTTCTTTTGCAGTGTCAAACGATCTCTGGTCTGTGAAATATACTCCTTGATTTACAGAAAGAAGGACGTACAATCCAGACTGCGAGACTCGAACCGAACAGCCATGGCAGAGCTAACTCATATGATAGACAGCGAGGTGTTCCTGGCCTTCTCTACCTACGCCACTGTCGTCGTCCTCAAGATGATGCTGATGTCTCCTATGACTGCATACTTCCGCTTCACGAGAAAGtgTTTTGCCAACATGGAAGACACAGGGATGGCTAAGACTCCAGAGGACAAGAAGAGGATGCTGAGAGTTGACCCGGATGTGGAACGTGTGAGAAGaTGCCACCAGAACGACCTGGAGAACATCATTCCGTTCGTAGTGATTGGTCTGCTGTATACCCTGACGGGGCCAGACCTCTCCACTGCTCTGCTCCACTTCCGGGTGTTTGTTGGTTCCAGGCTCTTCCACACGGTGGCCTACGTCCTCCCCCTGCCCCAGCCCAGCAGAGGTCTAGCTTGGATGGTTGGCATGGGCGCTACCTTCTCCATGGCATACAGAGTGCTAAGCTCAACGCATCTCTGAAGAGGCGATCAATCAATTAATAATTAATCAGATTGATTGATTCAAAGTTTTCAGATGGCCTAAAATAGTCCTCGGGACACTCTACCTCTGAGGAGACACTCACACATTTATTAGACCTGGGTCAAATAGGCTACATAATGTTAAATACGTTTGAGAGTGCTTGATTGTACTTGGAGTTTGCACTTCTGGGACGATTCTATTGGTTCTGTTGTATCAGGCAGACTAACTATACATTCTCTGCACGTTTTGTTTTTAACTCACCACTGAATTTGATctgtgcaacaaaaaaaaaagtattaataTCAGCAAAAAATAATTAAACTAAACGTAGGGCTCGATTCAATCTATTTCACGGAAGGTCAGTGCTAGCGCGCAGTAGACATTAAACGGCAACGTTCTCGCGGAAACTCCATTCAAGGTAAACGCTGCATACATTCGGAAACTCCATTCAAGGTAAACGCTGCATACATTCGGAAACTCCATTTAACATTTCAAGTGCGCTAGAGCGCGGACTTTAGGCGATACGGATTGAATGGAGCCCTGAACTAAAATCAAGTGTAGTTCAGTATCCGATACCGCATGTAATCTGGCTATTTTTACCCACATCAAATCACCAGTTTATTCgtcgcgtacacagatttgcagatgttatcgcatgTGCTGTAAAATGATAGTGTTGCTAGGTCCAATAGTGCAGTCATACCGAGCAatgcattaaaaataaataaaacatacacACATGACCCGGTCTGTCTGGTTGTCTGACACACAGCCCTACAGACCCGGTCTGTCTGGTTGTCTGACACACAGCCCTACAGACCCGGTCTGTCTGGTTGTCTGACACACAGCCCTACAGACCCGGTCTGTCTGGTTGTCTGACACACAGCCCTACAGACCCGGTCTGTCTGGTTGTCTGACACACAGCCCTACAGACCCGGTCTGTCTGGTTGTCTGACTGACTGCAAACACCTATTTTATATCTTAGACATTTTTTTTGCATCTGATGTGATAATCTAATGTTTATAAATTATTAAATTCGGGTTTTGGGAATTAAAGTTGAATTAAAAATGTGTGTGGCGGGGATTATTGTTTGATTTTAATTGAAATAGGGCCTTTGAAGTAGGCTACAAATACCAGAGATATTTTGCTAATTGGCTAATGAATATGACCTTATACTTGATCTAATTCTGTATCTTTTTAAATTCTGTATATGGTTTTAGATCTacatatgatatgatatgtttaCTAGGCCACGTATCTGTAATGCTACTGATTGGTTTGCTTTGTTCGTTCCATTTTCTAAGCCAATCAGGGATTGTCCCTTTTTTAATGCTTTCCACCTGTAAATAAACGAACGATCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950061 lncRNA upstream 28268 5950516 ~ 5951083 (+) True G1703435
TU1950092 lncRNA upstream 35202 5941409 ~ 5944149 (+) True G1703466
TU1950083 lncRNA upstream 65722 5913218 ~ 5913629 (+) True G1703457
TU1950082 lncRNA upstream 69095 5909955 ~ 5910256 (+) True G1703456
TU1950077 lncRNA upstream 81822 5897213 ~ 5897529 (+) True G1703451
TU1950107 lncRNA downstream 11991 5998632 ~ 5999038 (+) True G1703478
TU1950115 lncRNA downstream 24725 6011366 ~ 6013717 (+) True G1703483
TU1950122 lncRNA downstream 42698 6029339 ~ 6030265 (+) True G1703490
TU1950134 lncRNA downstream 66863 6053504 ~ 6066427 (+) True G1703499
TU1950137 lncRNA downstream 68853 6055494 ~ 6126262 (+) True G1703500
XM_036956684.1 mRNA upstream 100060 5865290 ~ 5879291 (+) False LOC118936346
XM_036956685.1 mRNA upstream 101643 5865290 ~ 5877708 (+) False LOC118936346
XM_036956681.1 mRNA upstream 322764 5611886 ~ 5656587 (+) False LOC110519381
XM_036956687.1 mRNA downstream 134 5986775 ~ 5993790 (+) False LOC110527635
XM_036956688.1 mRNA downstream 134 5986775 ~ 5993790 (+) True LOC110527635
XM_036956489.1 mRNA downstream 241440 6228081 ~ 6252333 (+) False mrps33
NM_001171863.1 mRNA downstream 241560 6228201 ~ 6251678 (+) False mrps33
XM_036956701.1 mRNA downstream 273172 6259813 ~ 6300981 (+) False LOC110500907
TU1949988 other upstream 261650 5717199 ~ 5717701 (+) True G1703391
TU1949920 other upstream 382923 5585531 ~ 5596428 (+) True LOC110511233
TU1949137 other upstream 724466 5254165 ~ 5254885 (+) False G1702856
TU1949138 other upstream 724466 5254165 ~ 5254885 (+) True G1702856
TU1948974 other upstream 790504 5184474 ~ 5188847 (+) True LOC110516940
TU1950617 other downstream 241473 6228114 ~ 6252320 (+) False mrps33
TU1950618 other downstream 241473 6228114 ~ 6252320 (+) False mrps33
TU1950619 other downstream 241473 6228114 ~ 6252320 (+) False mrps33
TU1950620 other downstream 241473 6228114 ~ 6252320 (+) False mrps33
TU1950621 other downstream 241473 6228114 ~ 6252320 (+) False mrps33

Expression Profile