RNA id: XM_036956687.1


Basic Information

Item Value
RNA id XM_036956687.1
length 795
RNA type mRNA
GC content 0.53
exon number 4
gene id LOC110527635
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5986775 ~ 5993790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCGCAGATCTGGCGGAAGTCCAAATATTCGCCccccttttttcttcttctgaaaCTGCCTGAACAAACCGCCCACAACGGCGCAGTCTAACAGGCTGGTACTTTTCCCTGGCTCCGAGTCAAAACCAAAGACGAAGTTTCTTGAAAAGCGAGACTCGAACCGAACAGCCATGGCAGAGCTAACTCATATGATAGACAGCGAGGTGTTCCTGGCCTTCTCTACCTACGCCACTATCGTCGTCCTCAAGATGATGCTGATGTCTCCTATGACTGGATACTTCCGCATCACGAGAAAGGCATTTGCTAACCAGGAGGACACCAGTCTGGCCTCCTCTACGGAGGACAAGAAGAAGCTGGTCAGGGTGGATCCTGATGTGGAGAGAGTACGAAGaTGCCACCAGAACGACCTGGAGAACATCATCCCGTTCGTAGTGATTGGTCTGCTGTATACCCTGACGGGGCCCGACCTCTCCACTGCTCTGCTCCACTTCCGGGTGTTTGTTGGTTCCAGGCTCTTCCACACGGTGGCCTACGTCCTCCCCCTGCCCCAACCCAGCAGAGCTGTGGCCTTCCTCATCGGACTGGTCACCACCAGCTCTATGGCCTCTAGGGTTCTGATTACTGCGCTTTATCTGTAGAGGCctgaggggacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccactacaagGGCCTTGTCTTTGAGGGTCTCCATTGAATGTGCTTGAGGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950061 lncRNA upstream 35692 5950516 ~ 5951083 (+) True G1703435
TU1950092 lncRNA upstream 42626 5941409 ~ 5944149 (+) True G1703466
TU1950083 lncRNA upstream 73146 5913218 ~ 5913629 (+) True G1703457
TU1950082 lncRNA upstream 76519 5909955 ~ 5910256 (+) True G1703456
TU1950077 lncRNA upstream 89246 5897213 ~ 5897529 (+) True G1703451
TU1950107 lncRNA downstream 4842 5998632 ~ 5999038 (+) True G1703478
TU1950115 lncRNA downstream 17576 6011366 ~ 6013717 (+) True G1703483
TU1950122 lncRNA downstream 35549 6029339 ~ 6030265 (+) True G1703490
TU1950134 lncRNA downstream 59714 6053504 ~ 6066427 (+) True G1703499
TU1950137 lncRNA downstream 61704 6055494 ~ 6126262 (+) True G1703500
XM_036956690.1 mRNA upstream 134 5979351 ~ 5986641 (+) False LOC118942842
XM_036956691.1 mRNA upstream 134 5979399 ~ 5986641 (+) False LOC118942842
XM_036956689.1 mRNA upstream 134 5979407 ~ 5986641 (+) False LOC118942842
XM_036956692.1 mRNA upstream 134 5979411 ~ 5986641 (+) False LOC118942842
XM_036956693.1 mRNA upstream 134 5979437 ~ 5986641 (+) True LOC118942842
XM_036956489.1 mRNA downstream 234291 6228081 ~ 6252333 (+) False mrps33
NM_001171863.1 mRNA downstream 234411 6228201 ~ 6251678 (+) False mrps33
XM_036956701.1 mRNA downstream 266023 6259813 ~ 6300981 (+) False LOC110500907
XM_036956699.1 mRNA downstream 266027 6259817 ~ 6304321 (+) False LOC110500907
XM_036956700.1 mRNA downstream 266029 6259819 ~ 6304321 (+) False LOC110500907
TU1949988 other upstream 269074 5717199 ~ 5717701 (+) True G1703391
TU1949920 other upstream 390347 5585531 ~ 5596428 (+) True LOC110511233
TU1949137 other upstream 731890 5254165 ~ 5254885 (+) False G1702856
TU1949138 other upstream 731890 5254165 ~ 5254885 (+) True G1702856
TU1948974 other upstream 797928 5184474 ~ 5188847 (+) True LOC110516940
TU1950617 other downstream 234324 6228114 ~ 6252320 (+) False mrps33
TU1950618 other downstream 234324 6228114 ~ 6252320 (+) False mrps33
TU1950619 other downstream 234324 6228114 ~ 6252320 (+) False mrps33
TU1950620 other downstream 234324 6228114 ~ 6252320 (+) False mrps33
TU1950621 other downstream 234324 6228114 ~ 6252320 (+) False mrps33

Expression Profile