RNA id: XM_036956704.1


Basic Information

Item Value
RNA id XM_036956704.1
length 4329
RNA type mRNA
GC content 0.53
exon number 15
gene id LOC118942844
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6712920 ~ 6879730 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTGTCACAACCGGAGGAGGCTGGGAAGAAAAGGAGTGTTGTGTATCGAGGACGGCCTCGGGAAAGTGTGAACACAATCACTGCCGCTGGAACGACCGTCCTGGCGGGTCATACGTCAGTCGTTTCGTGAGGATATACGCTTTTACCGGGATATAATGGATGTTGACATTGATCTCTGAGTTTGAGAAAAAAGAGGGGACGTTTCATGTCGATTTGTTTTCTTCCCCTGCTGTCTCGGATGCCGCATTTCTTGTTGCTTTGGTCTGTGGCTGGCAGCTGCTCCTCACAGTAACACGAAACACACACTGCTGCTATTGAaagagcggtgtgtgtgtgtgtgtgtgtgtgtgtgctgcgatCCAAAAGACTCCCCAATGGAAGGAATTTGTTGATCGCAGCGGGAACGGGTTTTCGGACTCTTTTTTAAAAAATAAGATAAAAATACATTATCGGCTGTTTGAAAAAGCAGGGCCCGTGTGTCTTTGGCTTGACACTGGTGCTACTTGCCATTAGCTTGTGCTGCTAACGGAATAAAAGCTGCGTCCCTGTGAAGTGGACTCAACACCAACACTGAGCATTACCTTGAAATACACAGTATCACAAACTGAATCAAACAATTAGTCCTCTTTTGAAATCGCTCCTCTCCGTTTTACGCAACACAGAAGGTGATGGGTGACATTTGTTTTGTTCTTCTACCAACTAGCCTTACATTTAGGAGTGGATTAAAAGGAGGACCACCATATTAGTGGAGTCAAGTCGGGTTATTTTGGTGTTGGGCTACTGGAGGCTTCCTGCTGTCTCCGGGTAAGAAGACCGACGGTTGGAGCTTCATCTGCGCCCGtATCATGTCCCCCCCCGGCCAACAGCTGCTACCCACATAGAGGTCAGACTTCAGAGGTTGCGCCGCCTCTCGTTCTGGGCTATCGCCACAGAGGATGCTGGGAATGTGTCGCGGGCGCAGGAAGTTCCTCGCTGCCTCCCTCGCCCTGCTCTTCATCCCCGCACTCACCTGGCTGTACCTCTCCGCTGGCAACTTCCAAGTGAAGCCCCTTCCCCTGTCGCCCCTGTTGCCTCAGTTGTCCACGTTGACGGCCAGGGGCGGGGCCTTGGGAGGGGGTGTGTCTAGGGAGGCGTTGGAGCTGAGGGTCCGTGAGGTGGAAGAGGAGAACCAACTTCTCCGCCGTGAACTCAGCCGACCCCCTCGGAGCCCTGCTGGCCCTGCTCCACATCACACCAATCACCGCGGCAACCAGAGCAAGACTCACTCGGAGGAGGGAACAGGGGACAACGAGGCGGGGCTTAAAGCTGGCTCCCCGGGCAACAGGTCAGACTGTGTGCAGCAGCCAGCGGTAGACAAGTGTGAGaccaTTCACGTGGCCATCGTGTGTGCCGGGTACAACGCCAGTCGTGATGTGGTGACACTCGTCAAGTCAGTCCTTTTTCacagGCGAAACCCTCTCCACTTCCACATCATAACGGACTCTACAGCCCAGCAGATCCTAGCCTCTCTGTTCCGTACCTGGATGGTCCCTGCTGTCAGGGTGGACTTCTATGATGCAGACGAACTCAAGGCTGAGGTGTCGTGGATCCCCAACAAGCATTACTCCGGTATCTACGGTCTGATGAAGCTGGTGCTCACCAAGACCTTACCCCCAGACCTGCAGAAAGTCATCGTCCTGGACACAGATATCACCTTCGCTACGGACATCGCTGAGCTCTGGGCCGTCTTCCACAAGTTCAAAGgTCAGCAGGTTCTAGGTCTGGTGGAGAACCAGAGTGACTGGTACCTGGGGAACCTGTGGAAGAATCACCGGCCCTGGCCCGCCCTGGAGAGGGGCTTCAATACagGTGTGATCTTGCTGCTGCTGGACCGACTGAGGAAGCTGCGGTGGGAACAGATGTGGAGactgacagcagagagagaactGATGAGCATGTTGTCTACATCACTGGctgaccaggacATCTTCAACGCCGTGATCAAACAGAACCCCTTCCTGGTTCACCAGCTGCCCTGCTTCTGGAACGTTCAGCTGTCAGACCACACCCGCTCGGAGAAGTGCTACAAGGATGTTTCAGACCTCAAGGTCATCCATTGGAACTCTCCTAAGAAGCTGAGAGTGAAGAACAAGCATGTAGAATTCTTCAGGAACCTGTACCTCACCTTCCTGGAGTACGACGGAAACCTCCTGAGACGAGAACTCTTCGGCTGCCCCAGCGAGACAGACCACAACAGCGAAAACCTTCAGAAGACTCTGTCAGAGCTGGATGAAGATGATCCGTGTTATGAGTTCCGCCGGGAGCGTTTCACGGTTCACAGGACTCACCTCTATTTCCTTCACTACGAATATGAACCCAGCACGGACCACACAGACGTTACACTGGTGGCACAGCTCTCCATGGACAGactcCAGATGTTAGAGGCTATCTGTAAACACTGGGAAGGTCCTATCAGCCTGGCCCTGTATCTCTCGGACGCTGAGGCTCAACAGTTCCTGCGCTACACCCAGGGGTCAGAGGTCCTGATGTCCAGAGGAAACGTGGGCTACCACATCGTCTACAAGGAGGGTCAGTTCTATCCGGTCAACCTGCTCAGGAACGTAGCCATGCGGCAGGTCAACACGCCCTACATGTTCCTGTCAGATATCGACTTCCTGCCCATGTACGGCCTCTACGAGTACCTCAGGAAGTCAGTGGTACAGCTGGACATGGCTAACAGCAAGAAGGCGTTGGTGGTGCCAGCCTTCGAGACGCTCCGTTACCGTCTGTCTTACCCCAAGTCCAAGGCCGAGCTGCTGTCCCAACTGGACATGGGGACTCTGTTCACCTTCAGATACCATGTCTGGACGAAGGGTCATGCTCCCACTAACTTTGCTAAGTGGAGGACTTCCACCACGCCGTACAGAGTCCAGTGGGAAGCGGACTTTGAACCCTACGTGATGGTGAGACGGGACAGTCCAGAGTACGACAGGCGCTTCGTTGGCTTTGGGTGGAATAAAGTGGCTCATATTATGGAGCTGGATGCACAGgaGTATGAGTTTGTGGTTCTGCCCAACGCCTATATGATCCACATGCCTCATGCTCCCAGTTTCGACATCACCAAGTTCCGGTCCAACAAGCAGTACCGCGTCTGCCTGAAGACCCTGAAAGAGGAGTTTCAACAGAACATGTCTAGACGATATGGCTTCGCTGCCCTCAAATACATGACTGCAGAGAACAACAGCTAGCCAACACCGATGAGCCAGGACACTCTGACCCGTTATTGACTACACTACCCATAACACCCTTCTCTAAGGCTGTCTAGGACTACACCTCtacagaggagagggaaagggcgGTGGATTCTAAGGACAGTCGATGTAGGGGAGTCGGGAGTGGACAGAACGGTTACTAAAGACTCTTACTACGAACTCTGACCCGTTATTGACTACACTACCCATAACACCCTTCTCTAAGGCTGTCTAGGACTACACCTCtacagaggagagggaaagggcgGTGGATTCTAAGGACAGTCGATGTAGGGGAGTCGGGAGTGGACAGAACGGTTACTAAAGAATCTTACTACGAACTCTGACCTTTGTGCCAACCGATCATGAGGTTTTAAATTGTGAGCTCTGATTCTTGTGAACTCTCACCTTATAGTTTGGGGTTATGACCTGGTTAGACCAGCGTTAACCAACTGAAGGGTAACCGGGGGTAACCGTAAGGTCGGTGTGTCCCAAACATTGTTTTTTTACCCCTTCCCGAGGACGGATGGAGCAGTCTGTCCAGAAGTTGCAGACCTGGTTTCTATCTGGTTTCTAGCTGGGAGAGGAAGCTGTTGCTGTGAATGTTGAGTCAGTACAGGGCTGGTTTGGACTCATACAACTCTCTGTTATTCTCTAACAATAGAACTGGGCATCACtatgggagggaaggaaggagggaggaagggaaggaaggagggaggaagggaaggaaggagagaggaagggaaggaaggaaggagggagggagggaaggaaggagggagggaggaagggaaggagggaaggaagggaatgagggaggaagggaaggagggaggaagggaaggaaggaagggagagcgggggagagagactgactgTAGCCCTGGACTTGGAAAGCAGACAAGACATTTGTTCTCTGGGCCATATCTAGAAGACCAGCTGCTCATTCCCAGCTGCTGTTTGTTGTGCTAAATGTAatatggtatgtgtgtgtctgtctccctccctccctccctccctgtctccctccctctctgtctccctcccactctgtctccctccctccttccctccctccctccctgtctccttccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951035 lncRNA upstream 5261 6707377 ~ 6707659 (+) True G1704102
TU1951017 lncRNA upstream 11753 6655412 ~ 6701167 (+) True G1704087
TU1951018 lncRNA upstream 52175 6659022 ~ 6660745 (+) True G1704088
TU1951014 lncRNA upstream 63227 6645678 ~ 6649693 (+) True G1704086
TU1951010 lncRNA upstream 67719 6644201 ~ 6645201 (+) True G1704085
TU1951130 lncRNA downstream 1504 6881233 ~ 6937400 (+) True G1704178
TU1951135 lncRNA downstream 10966 6890695 ~ 6891610 (+) True G1704183
TU1951151 lncRNA downstream 29519 6909248 ~ 6909558 (+) True G1704194
TU1951152 lncRNA downstream 30221 6909950 ~ 6910336 (+) True G1704195
TU1951161 lncRNA downstream 44387 6924116 ~ 6924914 (+) True G1704203
XM_036956699.1 mRNA upstream 408599 6259817 ~ 6304321 (+) False LOC110500907
XM_036956700.1 mRNA upstream 408599 6259819 ~ 6304321 (+) False LOC110500907
XM_036956702.1 mRNA upstream 408599 6266736 ~ 6304321 (+) True LOC110500907
XM_036956701.1 mRNA upstream 411939 6259813 ~ 6300981 (+) False LOC110500907
NM_001171863.1 mRNA upstream 461242 6228201 ~ 6251678 (+) False mrps33
XM_036956716.1 mRNA downstream 647798 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 647805 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 647827 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 648316 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 648471 7528200 ~ 7561975 (+) False LOC118942849
TU1950845 other upstream 306147 6406032 ~ 6406773 (+) True G1703953
TU1950622 other upstream 460600 6228114 ~ 6252320 (+) False mrps33
TU1951195 other downstream 127440 7007169 ~ 7007740 (+) True G1704232
TU1951409 other downstream 269671 7149400 ~ 7149993 (+) True G1704409
TU1951575 other downstream 648074 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 648205 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 648205 7527934 ~ 7545158 (+) False LOC118942849

Expression Profile