RNA id: TU1951803


Basic Information

Item Value
RNA id TU1951803
length 1402
RNA type TUCP
GC content 0.53
exon number 3
gene id LOC118942848
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7379889 ~ 7384439 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAGATGGACCCAGAGCGCCGCTCTGTGGAGAGTTCGGGAACTGCAGACGTGGTGTGGAAGCCGGTTAGTTTCTATAGCAACCTTCCAAGACCGTTCTGACAGGGGAAAGACGTTATTGTCTGACGTCAAACAGAACAGAGGAACGGAAGGATTTGACTGACGACCTGGTTGAAGGTGTTTTcattgtaccccccccccccccaatgaatGCTGCTACACAGCGCCCGACTGGAGTTACGTAGAAATGTGATTCAATAATAACCGAGATGATTTTGGCAGCTATGTCCTTGTCCTGGGATGAATGGTTATATATGGTGTAGTGTAGACAGGCAGAGACCTATACTGCAGGCAGAAATGTATTGATATCAGAATCAATAGAAACCCATATTGTCATCGGTAAAAACCCTCCCCTGACTCCGAGGCCACAGCTTACTGGCCACTTAAATCAACAGCGTCATTATATCAAGTCACCTGGCGTTCCAGGCCCGACGACATTTCAGGTCACCTTGTCTTCTGATGTCGTATGACATCATCATATCACTTCGCTACAGTGGATTACTACCTGACAACACTGCCCCCCTCCAACCCCTACATCCCCCTTCTCCATCACCATATCACCAGACTACACTGCCCCCCTCCAACCCCTACATCCCCCTTCTCCATCACCATATCACCAGACTACACTGACCCCCCTCATTCCCCCTTCTCCATCACCATGTCACCTGACACCCTCCAACCCCCTTCCCCATCACCATGTCACCTGATTCTACTGACCCCTCTCCAACCCCCTTCCCCATATCACCTGCCCCCCTCCAACCCCCTTCCCCATCACCATGTCACCTGACCCCCTCCAACCCCCATCACCATGTCACCTGACTCCACTGAACCCCCTCCAACCCCCATCCCCATATCACCTGCCCCCCTCCAACCCCCTTCCCCATCACCATGTCACCTGACCCCCTCCAACCCCATCCCCATATCACCTGACCCCCTCCAACCCCCATCCCCATATCACCTGACCCCCTCCAACCCCCATCCCCATATCACCTGACTCCACTGAACCCCCTCCCCATATCACCTGACCCCCTCCAACCCCTTTCTACCAGTCATGCTGTGGTGCATCTCAGCTAAAAGAGGTGGAATCATAGAACCTTTGGAATAGATTCTGACAGACGTCACTGCGTCACGAGCGTACGGATGACTGACTCAGCTCCCCCCCCGTTGGTTGGATTTACCAGGGGAGGGGGCGGGGACCTGCTGCAGATGACAGATGCAGAAGCCAATCAGGTTGGAATCAATAGCAAAAAAAAACGACATAGACCAACAGACCCTTGGATGATGCAACAGGGCAGCCAACTGCTCAGACGCCCGGACTACAACGTCTCCTGGAGTTATGACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951843 lncRNA downstream 2666 7376774 ~ 7377223 (-) True G1704729
TU1951834 lncRNA downstream 15628 7361391 ~ 7364261 (-) True G1704722
TU1951778 lncRNA downstream 20391 7356115 ~ 7359498 (-) False G1704692
TU1951779 lncRNA downstream 20391 7356115 ~ 7359498 (-) False G1704692
TU1951780 lncRNA downstream 21104 7356115 ~ 7358785 (-) True G1704692
TU1951806 lncRNA upstream 302 7381761 ~ 7382262 (-) True LOC118942848
TU1951847 lncRNA upstream 10778 7392237 ~ 7392599 (-) False G1704733
TU1951848 lncRNA upstream 10778 7392237 ~ 7395816 (-) False G1704733
TU1951849 lncRNA upstream 10778 7392237 ~ 7398744 (-) True G1704733
TU1951850 lncRNA upstream 15718 7397177 ~ 7397506 (-) True G1704734
XM_036956709.1 mRNA downstream 72492 7303605 ~ 7307397 (-) True LOC118942847
XM_036956708.1 mRNA downstream 328982 7048896 ~ 7050907 (-) True LOC118942846
XM_036956706.1 mRNA downstream 462353 6890523 ~ 6917536 (-) False LOC118942845
XM_036956707.1 mRNA downstream 462353 6890523 ~ 6917536 (-) True LOC118942845
XR_005038446.1 mRNA downstream 861543 6517888 ~ 6518346 (-) False LOC118942797
XM_036956721.1 mRNA upstream 209069 7590528 ~ 7679878 (-) False LOC118936572
XM_036956718.1 mRNA upstream 209069 7590528 ~ 7768302 (-) False LOC118936572
XM_036956719.1 mRNA upstream 209069 7590528 ~ 7768302 (-) False LOC118936572
XM_036956717.1 mRNA upstream 209069 7590528 ~ 7768303 (-) False LOC118936572
XM_036956720.1 mRNA upstream 209069 7590528 ~ 7768303 (-) False LOC118936572
TU1951838 other downstream 13749 7365547 ~ 7366140 (-) True G1704726
TU1951802 other downstream 78044 7299200 ~ 7301845 (-) True G1704700
TU1951804 other downstream 80803 7297925 ~ 7299086 (-) True G1704702
TU1951412 other downstream 222832 7156690 ~ 7157057 (-) True G1704412
TU1951410 other downstream 229910 7149565 ~ 7149979 (-) True G1704410
TU1951903 other upstream 207077 7588536 ~ 7601354 (-) False LOC118936572
TU1951902 other upstream 220343 7601802 ~ 7621841 (-) False LOC118936572
TU1951911 other upstream 276089 7657548 ~ 7768016 (-) True LOC118936572
TU1952105 other upstream 559690 7941149 ~ 7962240 (-) True G1704927
TU1952076 other upstream 607242 7988701 ~ 8002994 (-) True LOC110515713

Expression Profile