RNA id: XM_036956715.1


Basic Information

Item Value
RNA id XM_036956715.1
length 2238
RNA type mRNA
GC content 0.54
exon number 11
gene id LOC118942849
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7527527 ~ 7561975 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCAGGACACCTCTCACCACCTACTACGATGTGGCTCGACACGGGATCCTACAGGTCACAGGTAACCAGGACACCTCTCACCTCCTACTACGATGTGACTCGACACGGGATCCTACAGGTCACAGGTAACCAGGACACCTCTCACCCCTACTACGATGTGGCTCGACACGGGATCCTACAGGTCACAGGTGATGATAACTATGGCAGGAAGCTAGTGATCTTCAGTAGCTGCCTGATGCCCCCCTCCCATCagctcaaccaccaccacctactGCAGTATCTGATGTATACTCTGGACCAGTATGTAGAGAGTGACTATACGGTAGTGTACTTCCACCATGGTCTCCGCAGCTGCAACAAGCCCTCGCTACACTGGCTTCGAAACGCCTACAGAGAATTTGACAGGAAGTACAAGAAGAACCTGAAAGCCCTCTATGTCGTCCATCCTACTAACTTTATCAGAATCATCTGGAATATATTCCAACCACTCATTAGTCACAAGTTTGGTAAGAAGCTGACCTATGTAAACTACCTGTCTGAGCTCAGAGATCACCTGAGCTGGGATCAGCTCATCATCCCACCTGATGTCCTCAGGCATGACGAGAGGCTGCAGGCGGCCCAGAAGGGAGGTCTGCACCCCTCATCTAAGACTCCTCCCCCCAGACCTCCTCTGCCCACTCAGCAGTTTGGAGTCAGCCTGCAATATATTGCTGAGAAGAACCAGGGAGTTATGATCCCTCCTGTGATGTCCCAGACTGTGGCTTATCTCAAAGACAATGGCCTCCAGACAGAAGGTATCTTCAGGAGGTCCGCTCGTGTTCAGCTCATCAAGGACGTCCAGAAGCTCTACAACCAGGGGAAGCCAGTGGTGTTCGAGCAGTACGGAGACATCCACGTGCCTGCTGTCATCCTGAAGACCTTCCTCAGAGAGCTTCCTGAACCTCTGCTCACCTTCCCCCTCTACCACCAGATACAGGACGTAGTCCGAGTGGAGAGCAGTCTACGAGTGACCACCTGTAAACACATCCTAGAGAGACTACCAGAACACAACTACATGGTGTTGAAGTACCTGCTCTGCTTCCTGAACATGgtcTCTCAGCAGAGTATCATCAACAAGATGTCTCCCTCCAACCTGGCTTGTGTGTTTGGTGTCAATCTGTCCTGGCCTTCTCAgggctctgtctctctgacatctctAACACCGCTCAACATCTTCACTGAGATCCTTATAGAACATTACCATACAGTCTTCAGCTCCCGCTGCCCACAAGCAGAGGTACTGCCCTGATACCAGCCCTGATACCAGCCCCGGGACCAGCCCCGATACCACCTGATACCAGCCCCGATACCACCTGATACCTTCCCCCGATGCCAGCCCCGGTACCGGCCCCGATACCACCTGATACCAGCCCCGATACCACCTGATACCAGCCCCGGGACCAGCCCCGATACCACCTGATACCAGCCCCGATACCACCTGATACCTTCCCCCGATACCAGCCCCGGTACCGGCCCCGATACCACCTGATACCAGCCCCGATACCACCTGATACCAGCCCCGATACCAGCTGATACCAGCCCCGATACCACCTGATACCAGCCCCGATGCCAGCCCCGGTACCACCTGATACCAGCCCCGATGCCAGCCCCGGTACCACCTGATACCTTCCCCTGATACCAGCCCCGGTACCACCTGATACCAGCCCCGGTACCACCTGATACCTTCCCCCGATACCAGCCCCGGTACCACCTGATACCTTCCCCCGATACCAGCCCCAATACCAGCCCCGGTACCACCTGATACCAGCCCCGGTACCACCTGATACCAGCCCCGGTACCAGCCCCGGTACCACCTGATACCAGCCCCGGTACCACCTGATACCAGCCCCGATACCAGCTCCGTTACCAGACCCGGTACCAGCCCACCACCGTACGGACAGGCTCCACTGCACAGCCCAACAAAACAGACACGCTGTGATTGTCTACTGGGATGACCTGTTTTTGAAGAATGTCCCCCAACCACCAGTTGCTGCTGAAACAAGATGGCTCCCAGAATCTGTTCCTTTTCTTTCTCCTGTGACATAATCCAGTTTGTTTTGGTGCACAACTGACTGACTTcattgtccccatggggacatgttgttgcagtgtcatgttcACATTTAAAGTTTAAATACAAAACACAATTGACAaaacaactttcataacagttacataccaataaaacatgtttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951535 lncRNA upstream 70031 7466819 ~ 7471190 (+) True G1704502
TU1951532 lncRNA upstream 77340 7462300 ~ 7463881 (+) True G1704500
TU1951506 lncRNA upstream 135332 7405143 ~ 7405889 (+) True G1704486
TU1951497 lncRNA upstream 149992 7389897 ~ 7391229 (+) True G1704479
TU1951496 lncRNA upstream 159750 7380411 ~ 7381471 (+) True G1704478
TU1951590 lncRNA downstream 11111 7573086 ~ 7574092 (+) True LOC118942991
TU1951592 lncRNA downstream 33963 7595938 ~ 7600472 (+) True G1704539
TU1951596 lncRNA downstream 38965 7600940 ~ 7601789 (+) True G1704542
TU1951597 lncRNA downstream 40308 7602283 ~ 7602753 (+) True G1704543
TU1951607 lncRNA downstream 100351 7662326 ~ 7704714 (+) True G1704549
XR_005038485.1 mRNA upstream 661491 6712920 ~ 6879730 (+) False LOC118942844
XM_036956703.1 mRNA upstream 661492 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA upstream 661492 6712920 ~ 6879729 (+) False LOC118942844
XM_036956705.1 mRNA upstream 661494 6783344 ~ 6879727 (+) False LOC118942844
XM_036956700.1 mRNA upstream 1236900 6259819 ~ 6304321 (+) False LOC110500907
XM_036956722.1 mRNA downstream 238691 7800666 ~ 7829915 (+) False LOC110510398
XM_036956723.1 mRNA downstream 238692 7800667 ~ 7829915 (+) False LOC110510398
XM_036956725.1 mRNA downstream 239890 7801865 ~ 7829915 (+) False LOC110510398
XM_036956724.1 mRNA downstream 239891 7801866 ~ 7829915 (+) False LOC110510398
XM_036956727.1 mRNA downstream 239891 7801866 ~ 7829915 (+) False LOC110510398
TU1951567 other upstream 571 7527934 ~ 7540650 (+) False LOC118942849
TU1951409 other upstream 391228 7149400 ~ 7149993 (+) True G1704409
TU1951195 other upstream 533481 7007169 ~ 7007740 (+) True G1704232
TU1951043 other upstream 737085 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 1134448 6406032 ~ 6406773 (+) True G1703953
TU1951624 other downstream 95454 7657429 ~ 7657869 (+) True G1704562
TU1951729 other downstream 287585 7849560 ~ 7850120 (+) True G1704651
TU1952417 other downstream 976953 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 976953 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 981997 8543972 ~ 8561212 (+) False LOC118942994

Expression Profile