RNA id: XM_036958454.1


Basic Information

Item Value
RNA id XM_036958454.1
length 1237
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC118942991
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7561344 ~ 7574758 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCCAGCCCCGGTACCACCTGATACCAGCCCCGATGCCAGCCCCGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTTCAGCAGGTGAGCTACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTTCAGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATGAAATCCAGACAGGAAGTAGTATTAGGGCAGGTGAGCCACATCATACATTAGATTGACAGATGTAGCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951574 lncRNA upstream 142 7552605 ~ 7561202 (+) True LOC118942849
TU1951587 lncRNA upstream 2574 7558306 ~ 7558770 (+) True G1704535
TU1951535 lncRNA upstream 90154 7466819 ~ 7471190 (+) True G1704502
TU1951532 lncRNA upstream 97463 7462300 ~ 7463881 (+) True G1704500
TU1951506 lncRNA upstream 155455 7405143 ~ 7405889 (+) True G1704486
TU1951592 lncRNA downstream 21180 7595938 ~ 7600472 (+) True G1704539
TU1951596 lncRNA downstream 26182 7600940 ~ 7601789 (+) True G1704542
TU1951597 lncRNA downstream 27525 7602283 ~ 7602753 (+) True G1704543
TU1951607 lncRNA downstream 87568 7662326 ~ 7704714 (+) True G1704549
TU1951660 lncRNA downstream 169655 7744413 ~ 7744889 (+) True G1704598
XR_005038485.1 mRNA upstream 681614 6712920 ~ 6879730 (+) False LOC118942844
XM_036956703.1 mRNA upstream 681615 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA upstream 681615 6712920 ~ 6879729 (+) False LOC118942844
XM_036956705.1 mRNA upstream 681617 6783344 ~ 6879727 (+) False LOC118942844
XM_036956700.1 mRNA upstream 1257023 6259819 ~ 6304321 (+) False LOC110500907
XM_036956722.1 mRNA downstream 225908 7800666 ~ 7829915 (+) False LOC110510398
XM_036956723.1 mRNA downstream 225909 7800667 ~ 7829915 (+) False LOC110510398
XM_036956725.1 mRNA downstream 227107 7801865 ~ 7829915 (+) False LOC110510398
XM_036956724.1 mRNA downstream 227108 7801866 ~ 7829915 (+) False LOC110510398
XM_036956727.1 mRNA downstream 227108 7801866 ~ 7829915 (+) False LOC110510398
TU1951570 other upstream 15500 7527934 ~ 7545844 (+) False LOC118942849
TU1951575 other upstream 16186 7527803 ~ 7545158 (+) False LOC118942849
TU1951568 other upstream 16186 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 20694 7527934 ~ 7540650 (+) False LOC118942849
TU1951409 other upstream 411351 7149400 ~ 7149993 (+) True G1704409
TU1951624 other downstream 82671 7657429 ~ 7657869 (+) True G1704562
TU1951729 other downstream 274802 7849560 ~ 7850120 (+) True G1704651
TU1952417 other downstream 964170 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 964170 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 969214 8543972 ~ 8561212 (+) False LOC118942994

Expression Profile