RNA id: XM_036956719.1


Basic Information

Item Value
RNA id XM_036956719.1
length 3196
RNA type mRNA
GC content 0.57
exon number 14
gene id LOC118936572
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7585971 ~ 7768303 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagacgagGGGAGAGTTCTGTTCTTTCACTGCTCCATCCGGGAATTTTCGAATTAGCATTGACAGCCGAAGCGCAACTTTTCCCCAGGCAAAGTGAAATCAAGCCGCTCACTCGGACAAAATATAGTCCCCACTATTCAACTAAAAATGATCAAAAGAAAAATAAATCGACCGTTTGGAGAGGATGCGTCGACGCGGCGTTATTTTTAGAGTGGATCTGTCCAGGTGCTGAAACCTTTCCCCGGTGTTTAGAGCACTTTGCTCAGCGGCGTAAAGTGAGTGATGAGCCCTCTACACAGCAAAGAAGCAAGAACTTGCTTTGCAGCCTGAGTAGTTCTTCTTTCGATTGTTATTGtcgctttaaaaaaaaacattttaattcacTTAAACTTCACATTGATTACATCGAAAGTGGTACAAAAGTGTTTTTGAAGTCGGAACATGGAACTACAATGCCTGCAAGAGGCGTTGAAAGTCGAGATCCAATGTCATCAGGATGGAGAGCTTAAGAAACAACTACACGAAAGACACGACAGAATAACAGCCCTAAGCGAAAAACAAAAGAAGCTGACTGTTAGAAGTTGTCCCGTAGGAGGGGCCACCAAGCCCCTCTCCCTCATCaagccccctcctcctccctcctcacaaAGCATCTCCATCTCCGTTCTACCGGCCAACCCGGTCGCCAAGACAGCTCCCGTTGCCATGGTGACAGCGCACATGACCGGTGGACAAAAGGTGGTGTCGGGAAGCGCAGCTCCAGggagctcctcctctcctcctcctctacagacaTCCTCCATCAACCTCCAGACCAATAGAGGGTCGGGAGGGGCGGTGCTACAGCCTTACAGTAGGAGAGAGaTGCTGGGAAACCTAACAGTAGTGCCCATCAAGGTTCCTCAGGTCAGCTCTCTACACCGGCTGTCTGGACAGACCTCCACTGTTCTACCtcaggttCAGCCAAAGAGTGTGATCCCAGCCAGCCTCCTCCCCAGCCACAGCCCTGTGTCTCTCCCTAGggagcagccagccagcctcctccTCAGCCACAGCCCTGTGTCTCTCCCTCaggagcagccagccagccagaaacAGTCATCCTGTCAGGCCCTCAGTCTCCTCAACCTCCAGAGAGCTACCGCTGTAGTCAGCCCTAAGAGCCACGCCCACAGTTTTAACCACACCCACAGCTCTAGCCACACCCTCACACAGAGCCACACCCTCGGCCCGGCCCTGCCTACAGCCAACAGCACGTTCAGTCCAGAACGTCTCTCCATAGGCCAGGGAGACACAGCCACCTTCACAACCTCCTCACCCCCACCCCTGGCCCAGGCCCTGGTCTCTCCCCTGGCCCAGACCCTGGCCTCTCCCCTGGCCCAGACCCTGGTCTCCCCCCTGGCCCAGACCCTGGTCTCTCCCCTGGCCCAGACCCTGGCCTCTCCCCTGGCCCAGACCCTGGTCTCCCCCCTGGCCCAGACCCTGGTCTCTCCCCTGGCCCAGACCCTGGTCTCTCCCCTGGCCCAGACCCTGGTCTCTCCCCTGGCCCAGACCCTGGTCTCTCCCCTGGCCCagacccagtctctctccccggCCCagacccagtctctctccccgACCCagacccactctctctccccggcccagacccagtctctctccccggCCCagacccagtctctctccccggCCCagacccagtctctctccccggCCCTAGCCTGGCCGGGAGGCATCTCCCCCACCTCTACCAGCAGCATCAGCCCAACAGCCATCTCAGCCTCAGTTGCCCCCGGTGTGACCTTCTCCATCATCTCTGCCTCGCCGCCTGCCGACACCGGGAACAACAGGGTGTGGACCATCAGTGAGGCAGTCAAGGTCCAGCCGCTGGTCTTCAACACTGACAATAAGTTGAAAATAATCCAGCCGGAGGCAGAGACCCCCAGCTCCTCCCAGGACTCCCCAGGAGGACCCCAGGGGGCCGACAGCCCCTCACAGGAGATCCCCTCCATCACCTCGACCAccaacccctccacctctccctcctctacaccagccaagaagaagaagaaggatgaggacCCAGAGAAAATGTCCTTCATGGTGGCTCTTGGCCTGGTCACTACAGAGACACTGGAAGAGATCCAGACcaagagacaggagaggaagaggcggAGCACAGCCAACCCAGCCTACAGCGGCCTGGTCCAACCAGAGCGTAAACGCCTTGCATCAAATTACCTGAACGACCCACTCTTCCTGTCAGTGAGAGCCACTGGGGACTACAGATGGAAGGAAGAGCTGGAGCACGACGACCACTGCTCCGTGTGTAAGGGGGACGGAGAGCTGCAGCTGTGCCACAACTGCCCCAGAGCCTACCACCCTGACTGCCTGCACCCACCTCTCAAAACACCGCCCCGGGGGGTCTGGGTTTGCACCAAGTGTCAGAAGAAGGTTCTGAACAAAGAGAACATGTCGTGGCCACAGAACTTTGTCCAGTCCTATGTGACACACAAGACGGtgagagagggggagaagaggagtctGCTCAGAAGGAATGTAGAGCTGAAGAAGGAGTGTGCTCACCTGGAAGAACAGGACCAGCAACTCAGCACGTCACTCACGCAGAAGGTGATGGACGTGCGGGAGCGTCTGATTGGTCAACAGAGGGACACCCAGTCCTCCCTGGAGCGTCTCAAGGCTCTGATTCGTCTGATCCAAAGAGACCAGATGATCCAGGTTACCATGACagccaccgccaccaccaccggAGTGTCCCTGCTCTCCCTGCCCTGGATCAAACCCTCCGGCGCCGCCACACACACAGTGCCCCCTGCTGGACCGTCTGTGCTACTGCAGCAGAAGACTCTGGTCATGCCACAGTCTCAGACACAGAGCCAGGCTCAGGGCAATGTCTGAGCTCTAGTAGTACCACCCCAGCCCACCAGGGGGCCACAGTTCACAGTCCAAGGCTGGCccacaaatggcactctattccctatatagtgtagaaCTTTTAGTAAACGGACCCATAGGAGAAGTTTCAAAGACATGTCCATTTGACATCAgagccctggtctgaagtagtacactatatagggaatagggctctggtctaaagtagtgtactatatagggaatagggctctggtctaaagtagtacactatatagggaatagggctctggtctaaagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951910 lncRNA downstream 841 7585971 ~ 7589687 (-) False LOC118936572
TU1951901 lncRNA downstream 2412 7585971 ~ 7588116 (-) False LOC118936572
TU1951900 lncRNA downstream 2638 7585971 ~ 7587890 (-) False LOC118936572
TU1951917 lncRNA downstream 59511 7530702 ~ 7531017 (-) True G1704781
TU1951895 lncRNA downstream 99575 7490559 ~ 7490953 (-) True G1704769
TU1952043 lncRNA upstream 17418 7785720 ~ 7786000 (-) True G1704879
TU1952044 lncRNA upstream 18015 7786317 ~ 7786668 (-) True G1704880
TU1952045 lncRNA upstream 18503 7786805 ~ 7787918 (-) True G1704881
TU1952052 lncRNA upstream 33710 7802012 ~ 7803351 (-) True G1704887
TU1952055 lncRNA upstream 35867 7804169 ~ 7805939 (-) True G1704889
XM_036956710.1 mRNA downstream 206089 7380579 ~ 7384439 (-) False LOC118942848
XM_036956709.1 mRNA downstream 283131 7303605 ~ 7307397 (-) True LOC118942847
XM_036956708.1 mRNA downstream 539621 7048896 ~ 7050907 (-) True LOC118942846
XM_036956706.1 mRNA downstream 672992 6890523 ~ 6917536 (-) False LOC118942845
XM_036956728.1 mRNA upstream 68848 7837150 ~ 7899152 (-) False LOC110516645
XM_036956729.1 mRNA upstream 68848 7837150 ~ 7899175 (-) False LOC110516645
XR_005038487.1 mRNA upstream 120609 7888911 ~ 7890273 (-) True LOC118942852
XM_036956756.1 mRNA upstream 133410 7901712 ~ 7924740 (-) False LOC110517214
XM_036956757.1 mRNA upstream 133410 7901712 ~ 7924740 (-) False LOC110517214
TU1951803 other downstream 209069 7379889 ~ 7381459 (-) False LOC118942848
TU1951838 other downstream 224388 7365547 ~ 7366140 (-) True G1704726
TU1951802 other downstream 288683 7299200 ~ 7301845 (-) True G1704700
TU1951804 other downstream 291442 7297925 ~ 7299086 (-) True G1704702
TU1951412 other downstream 433471 7156690 ~ 7157057 (-) True G1704412
TU1952105 other upstream 172847 7941149 ~ 7962240 (-) True G1704927
TU1952076 other upstream 220399 7988701 ~ 8002994 (-) True LOC110515713
TU1952160 other upstream 257987 8026289 ~ 8046882 (-) False pthlha
TU1952161 other upstream 257987 8026289 ~ 8045776 (-) True pthlha
TU1952844 other upstream 763433 8531735 ~ 8532803 (-) False G1705386

Expression Profile