RNA id: TU1951910


Basic Information

Item Value
RNA id TU1951910
length 2695
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id LOC118936572
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7585971 ~ 7768303 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGCCTTAATGTATTTACTCGGACCGTAAAGAAGCTAGATCACAGTGCTGCAAATTAAATAGGTATTTTCTGTGTGGCCCGaaaaatattttagatttttttttgttattttataaACTGGTATAATATTTGTTCtgcatatatagagagagagagagagagagacaacactagagTAGTTAGTTACAAATGAACAATGGAAGGATATGAAGAACAAAAAGACTGTACTGCTATAAATCAGAGTAGGTCTCTGTGTATAACATTTTGCCATAGTTATCAGGTGGGAAAAGGCCCAGGGAGAGAAGTTTTCATTGTGTATGTacggaaaaaaacaaacatacaagccttcaaaaacaaaaaaacaagagaatcacttttttttctctcagtATTAGTATAGTTTAAAGagggaaaaaaaagtatttatagaCGACTACAGAATTTAGTCTTTCTAGAGGAGAGTTGAGTATTTTTCATGCTGTTGATGACTTAGTTTGAGTATTGAGGAATATTAATGGAAGGGATCTATCGTTGTATATAGGTTGTATAATTATCCCAGGTCCTTCTCCATGTTCCTGTCACCggattcacaacaacaacaacaacaactcagaAGCGGCCATTTTGAACCATCCTGTAGTTGTGTGATCCAACCCCATTTTAATCCCTTTCTTTTCACCACTATAGAAAATATGccaaaaaaaacattacatttagtACTGGGAAATCCTGTGTACGTATCAAATATGTCTGGCATGCTTTTTTATCCCTGCCTGGttttgtatatttaaaaaaatatattttctggtTTTCACActattagttttttttttaaactctagATGATGTTCGTTATGATGACTTGACGTTTGAAGAGCCTGCTGATTTCAACTGTTTCTATTGTTCTGTTTCTAGTCTGTTAGATAGGTACAAATGAACTGTTTTCTAGTCTGCTGGAAGGTACAAAATGAACACTGCCTCGAGAACAACTAGATCCAACCAGGGTTTCCTTATTCTATAGTTTAATAAACGATCAAACACCAGTGAATGGGGGGGAAGAGGACTGTCATATCACTCTGCAACAGTTCAGTGTTGATCTCTAGTTAGACTTCATCACAGGGGGGATGGGGAAGAGGACTGTCATATCACTCTGCAACAGTTCAGTGTTGATCTCTAGTTAGACTTCATCacaggggggggggaagaggactGTCATATCACTCTGCAACAGTTCAGTGTTGATCTCGTTAGACTTCATCACAGGGGGGAggggggtcctaaaGGTGTAAAGGTGTTCCTGATGATCAAATCAATGCTGTGTTGTGGGATCCCTCTATTCTAAAATGACACACTGAGgaaaaaaaaactaacaatggGAATGGAGAGAAAATATATCGCTCTAAAGAGAGGACGACATATTATAATCTGTATTTGTGTTTGAACCAAACGGATCAAATGAGAAGGAAGATGCAATAATTAGAAGAGACCACCAATACATATCGAATAAAATACTTGTTTTCTACACAGAGCCTGACCGGAATCTATGATGTAGTGTAGCACACTTTGGGCAGGAGTTGTTGACAGCGCTAGGACTATAGAGAGGACTGATCCAACTGTCATCCATACCAAGCCTCAAAACACACTGAGGACATCCATACCAAGCCTCAAAACACACTGAGGACATCCATACCAAGCCTCAAAACACACTGAGGACATCCATATCAAGTTTGCCTTTCACAACCAAGATCTTTAAAAGGTGCAACTGAAACCCGAGCAGTAGTTTGTATGggctgtctgtctatctactgaTCCATCCATCTactgatctgtctgtctgtctgtctgtctgcctgtctctttctttctaatAGGGCTTTACCATTCCTTGGTCTTGTCCAACATTCAATACATATCATGAGTTCTGCCTCTCCCAACATGGAATATCACGACAGACCGTGACAGAGACGAGCATCTGCACAGCATACGGTCTAACCACTCTGATGGGAATCAAATCCCCAAGAGAGGGGGCTGAAAGACTGGTGCCATATCAAGTTGCATCAAGGTAGAAGTTCAAAccccacagatctaggatcaggctcAACCTAACTTTAACATTAGGAGAATACAGAATACATAAGATAACatgactccagatcagaggttTTTAGTGAAGCAGCTTCTACCACCTCCACGGTGTGCCCTTCATCCATTATCCCCAGCCAGAGGTATCCCAGACTACATCACCCAGAATCCTCCGGGAGAAACTGTGCAGTGTTTAAATACAAATCTATTTTAATACACTCAGACACAACCTTTGAACAAATGATAAAAACAtctttttttatattattttatattcttTTATCAACGATGAACAaaacaaaataagaaaataaacattgggactgttttttttatatattgtttGCCAATTATGCATAGTAATGAGCTTGCAATGTTCAATGTGTTGTTTTGCCACGAGGTGGACGGAGAGGGTAAAAACAGGAGAGATGACTACactctttttttttgtttacatGGAAATGTCGTTTGGCTGTTAATAAAGTAGtaattttttttctcccattGGCATTGATGACAAGGGGGCTGTTCAGTGGAGAGCGTGTACAGGGAAGCGTTTGTCTATTGCCAATGTAGTTGTATCTTGACGGTGATTTAAAGTTGATTGATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951917 lncRNA downstream 54954 7530702 ~ 7531017 (-) True G1704781
TU1951895 lncRNA downstream 95018 7490559 ~ 7490953 (-) True G1704769
TU1951893 lncRNA downstream 96941 7488603 ~ 7489030 (-) True G1704767
TU1951891 lncRNA downstream 102457 7483125 ~ 7483514 (-) True G1704765
TU1951884 lncRNA downstream 116665 7468550 ~ 7469306 (-) True G1704759
TU1951949 lncRNA upstream 36360 7626047 ~ 7730391 (-) True G1704802
TU1951952 lncRNA upstream 37355 7627042 ~ 7627622 (-) True G1704804
TU1951969 lncRNA upstream 69820 7659507 ~ 7660595 (-) True G1704820
TU1951978 lncRNA upstream 91457 7681144 ~ 7681449 (-) True G1704829
TU1952006 lncRNA upstream 156404 7746091 ~ 7746395 (-) True G1704854
XM_036956710.1 mRNA downstream 201532 7380579 ~ 7384439 (-) False LOC118942848
XM_036956709.1 mRNA downstream 278574 7303605 ~ 7307397 (-) True LOC118942847
XM_036956708.1 mRNA downstream 535064 7048896 ~ 7050907 (-) True LOC118942846
XM_036956706.1 mRNA downstream 668435 6890523 ~ 6917536 (-) False LOC118942845
XM_036956721.1 mRNA upstream 841 7590528 ~ 7679878 (-) False LOC118936572
XM_036956718.1 mRNA upstream 841 7590528 ~ 7768302 (-) False LOC118936572
XM_036956719.1 mRNA upstream 841 7590528 ~ 7768302 (-) False LOC118936572
XM_036956717.1 mRNA upstream 841 7590528 ~ 7768303 (-) False LOC118936572
XM_036956720.1 mRNA upstream 841 7590528 ~ 7768303 (-) False LOC118936572
TU1951803 other downstream 204512 7379889 ~ 7381459 (-) False LOC118942848
TU1951838 other downstream 219831 7365547 ~ 7366140 (-) True G1704726
TU1951802 other downstream 284126 7299200 ~ 7301845 (-) True G1704700
TU1951804 other downstream 286885 7297925 ~ 7299086 (-) True G1704702
TU1951412 other downstream 428914 7156690 ~ 7157057 (-) True G1704412
TU1951902 other upstream 12115 7601802 ~ 7621841 (-) False LOC118936572
TU1951911 other upstream 67861 7657548 ~ 7768016 (-) True LOC118936572
TU1952105 other upstream 351462 7941149 ~ 7962240 (-) True G1704927
TU1952076 other upstream 399014 7988701 ~ 8002994 (-) True LOC110515713
TU1952160 other upstream 436602 8026289 ~ 8046882 (-) False pthlha

Expression Profile