RNA id: XM_036956727.1


Basic Information

Item Value
RNA id XM_036956727.1
length 2116
RNA type mRNA
GC content 0.57
exon number 8
gene id LOC110510398
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7800666 ~ 7829915 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAGTGCATTCGTAACAGCCTAAACATTACTGAAACTTTTATTCGACCAAATAAACCTCATGTAGCAAATTAAATGTTTAAATTCGACCAAATTCTACACTCTCATTGACCCCACACATACAACAAAATAAATCACAATTCCGATGGGCGGAGTAAAacctctcgctttgcctcttcTTCTTCGCTGATCGGACAACCAACGATTATTCCAAGTTTAGTAGCATTTGGAATTGATTTACTATCAAAGGGCAGTTGTTATCGAACATTTTAATTAAAGGGGGGGAAAAAGAGAGCAGCGTTGCCATGGCGAAGAGGATTGCCGACAAAGAGCTGACTGACCGGAACTGGGaccaggaggatgagggagaggagGCAGGGACATTTTCCATCGCTAGTGATGATGTGATGAAGAGCAGGCCCATCAAGAAGGCCAAGCGTCGGGCTGCTGGTTCAGAGgggcagagtggaGGAGCATTCACAGTGTTTAAAGGGTTCTCCCTGGCCCCTACATCGGGAACCGGGCCAGCCGCTGAGGGGATCACAGCCTTCTCCGGGTTCGGGAATGGGGTAGGGTTTAAACCCCTGTCTGGGCTGTCCAATGGGAACAGTGTCAAACCTGTCACTCCGGCCCTCACCGGGTTCACCTCGCCTACTGCCACCAAGACCACCACACCAGgtTCATTAACATTCAGCGGCCCCTCCTCCAGTGCTGTCATCACAGGGCAGCAGTCTAATGGTTCCTCCCCCGCGGTTTCCAGTCGGtctctcagctcctctctctccactaacaGCGGTAACAACCAGGAATACAGTAGGCAGCTCACAGCTCTCAACTGCTCTGTCAGGGACTGGATCACCAAGCACGTCAACGGAAACCCCCTCTGTGACCTAAACCCCATCTTCAGGGACTATGAAAAGCACCTGGCCAGCATCGATAAGAAGTACGGAGGGAGTGGAGGGACTGGAGCTGTGACTGAAGCTGCTGTGGTGGCGGACGGAGGCTCAGAGAGcaggagcagagcagaggaacCAGAGGAGAAGCGGGCAGTCAGTACCGCACCACCACCCTCCTCTAGCGCCGCCGGCTCGACCGCCACGGCCCCGGTGTTCTCCTTCAGTAAGGACAAGGACGGCAGCGCTACGGCCCCGGGGGAGAGCTCAGCCGCTCCTGCTCCGATCCCCGCTGGCATCAGCTTTAGCTTGGGCCAGAAGGGGAACAGCTCAGTGTTGGGGTCTCTGAGCACCGGAGGAGCTCCtagtgtctcctcctcctccctgtttgGAGGCGCTGCTCCTCCTGCCTTCTCCTTCAGTGGGGCCAAAGCGGAGGCTGCCCCCACCCAGACCACAGATGAAAACGGGGAGGACTCGGATGAACCTCCCAAAGTGGAAGTCCAGGAGATTAAGGAGGCTGACGCGTTCTACTCCAGAAAgtgtaAACTGTTCTATAAGAAAGAGACGGAGTTCAAGGAGAAGGGAGTTGGAACGCTGCATCTGAAAACCACCTCAGACGGAAAGACACAGCTGCTAGTCCgcgctgacaccaacctgggtaaCATCCTGTTGAACATCATGGTCCAGCCCTCCATACTCTGTTCCAGGATGGGAAAGAACAacgtgatggtgatgtgtgttcCTAACCCTGTCGTGGACCACAACAACCCTACCAACCCTGTCGCCATGCTCATCAGGGTCAAAACAGCAGAGGACGCTGATGAACTGCACAACATACTGGAGGAGAAGAAAGCTTAGAGGACGAGCCCCCTGGAGGGTGGTACAGGCTGCCCCCAACTCCACCCTTCTGCCTATCAACTAACCCCAGGGCCAGTCCTGTACCCCTCCACCCCAGGGCCAGTCCTGTACCCCTCCACCCCAGGGCCAGTCCTGTACCCCTAGCCCCTCCACCTCAGGGCCAGGCCTGTACCCCTAGCCCCTCCACCCCAGGGCCAGTCCTGTACCCCTAGCCACCCCAGGACCAGTCCTGTACCCCTCCACCCCAGGGCCAGTCCTGTACCCCTCCACCCCAGTGCCAGTCCTGTACCCCTCCACCCCAGGGCCAGTCCTGTACCCCTAGCCCCTCCACCCCAGGGCCAGTCCTGTACCCCTAGCCCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951692 lncRNA upstream 4293 7797108 ~ 7797573 (+) True G1704629
TU1951690 lncRNA upstream 8562 7793078 ~ 7793304 (+) True G1704627
TU1951686 lncRNA upstream 15880 7785629 ~ 7785986 (+) True G1704623
TU1951660 lncRNA upstream 56977 7744413 ~ 7744889 (+) True G1704598
TU1951607 lncRNA upstream 97152 7662326 ~ 7704714 (+) True G1704549
TU1951707 lncRNA downstream 3396 7833311 ~ 7834957 (+) True G1704634
TU1951709 lncRNA downstream 7264 7837179 ~ 7839343 (+) True G1704636
TU1951728 lncRNA downstream 16570 7846485 ~ 7846694 (+) True G1704650
TU1951730 lncRNA downstream 20996 7850911 ~ 7852297 (+) True G1704652
TU1951732 lncRNA downstream 45314 7875229 ~ 7876500 (+) True G1704654
XM_036958454.1 mRNA upstream 227108 7561344 ~ 7574758 (+) False LOC118942991
XM_036956712.1 mRNA upstream 239891 7527556 ~ 7561975 (+) False LOC118942849
XM_036956732.1 mRNA downstream 43700 7873615 ~ 7877834 (+) False LOC118936573
XM_036956731.1 mRNA downstream 43700 7873615 ~ 7878590 (+) True LOC118936573
XM_036956730.1 mRNA downstream 52334 7882249 ~ 7883321 (+) True LOC118942851
XM_036956483.1 mRNA downstream 95101 7925016 ~ 7943584 (+) False yt6j
XM_036956485.1 mRNA downstream 95101 7925016 ~ 7943584 (+) False yt6j
TU1951624 other upstream 143997 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 256022 7527934 ~ 7545844 (+) False LOC118942849
TU1951575 other upstream 256708 7527803 ~ 7545158 (+) False LOC118942849
TU1951729 other downstream 19645 7849560 ~ 7850120 (+) True G1704651
TU1952417 other downstream 709013 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 709013 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 714057 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 714057 8543972 ~ 8561212 (+) False LOC118942994

Expression Profile