RNA id: XR_005038486.1


Basic Information

Item Value
RNA id XR_005038486.1
length 2273
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC118942850
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7803280 ~ 7805680 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCTACTGCCTCACTGATACTACTATAGACTGTCTAATAATACACAGCCTGCAGGCCTTCAGTGATAGAGGGGGTTGGATAGGCCTTCAGTGATTGGTATAGAGGGGTTGGATAGGCCTTCAGTGATTGGTATAGAGGGGTTGGATAGGCCTTCAGTGATTGGTATAGAGGGGTTGGTAGGCCTTCAGTGATTGGTATAGAGGGGTTGGATAGGTCTTCAGTGATTGGTATAGAGGGGGTTGGGTAGGCCTTCAGTGATTGGTATAGAGGGGGCTGGATAGGCCTTCAGTGATTGGTATTGAGGGGGTTGGATAGGTCTTCAGTGATTGGTATAGAGGAGGTTGGATAGGCCTTCAGTGATTGGTATAGAGGAGGTTGGATAGGCCTTCAGTGATTGGTATAGAGGGGGTTGGTAGGCCTTCAGTGATTGGTATAGAGGGGGTTGGTAGGCCTTCAGTGATTGGTATAGAGGGGGTTGGATAGGCCTTCAGTGATTGGTATAGAGGGGTTGGATAGGCCTTCAGTGATAGAGGGGTTGGGTAGGCCTTCAGTGATTGGTATAGATGGGGTTGGATAGGCCTTCAGTGATTGGTATAGAGGGGTTGGATAGGCCTTCAGTGATAGAGGGGTTGGGTAGGCCTTCAGTGATTGGTATAGATGGGGTTGGATAGGCCTTCAGTGATTGGTATAGAGGGGTTGGATAGGCCTTCAGTGATAGAGGGGTTGGGTAGGCCTTCAGTGATTGGTATAGAGGGGTTGGTAGGCCTTCAGTGATTGGTATGGAGGGGTTGGGTAGGCCTTCAGTGATTGGTATAGAGGGGTTGGATAGGGCTTCAGTAATTGGTATAGAGGGGTTGGGTAGGCCTTCAGTGATTGGTATGGAGGGGGTTGGATAGGTCTTCAGTGATTGGTATAGAGGAGGTTGGATAGGCCTTCAGTGATAGAGGGGTTGGGTAGGCCTTCAGTGATTGGTATAGAGGGGTTGGATAGGCCTTCAGTGATTGGTATAGAGGGGTTGGATAGGTCTTCAGTGATTGGTATAGAGGAGGTTGGATAGGCCTTCAGTGATAGAGGGGTTGGGTAGGCCTTCAGTGATTGGTATAGAGGGGTTGGATAGGCCTTCAGTGATAGAGGGGTTGGGTAGGCCTTCAGTGATTGGTATAGAGGGGTTGGATAGGCCTTCAGTGATTGGTATAGAGGGGGTTGGATAGGGCTTCAGTGATTGGTATAGAGGGGGTTGGATAGGCCTTCAGTGATTGGTATAGAGGGGTTGGATAGGCCTTCAGTGATTGGTATAGAGGGGTTGGATAGGCCTTCAGTGATTGGTATAGAGGGGTTGGATAGGCCTTCAGTGATTGGTATAGAGGGGTTGGATAGGCCTTCAGTGATTGGTATAGAGGGTTACTCAGGAGCTAGAGAGCTGGTTGGATAGGCCTTCAGTGACGGTAGCCAGCCAAATGACAGCAGTCTACGTATGAGTTAGTTTTATGAGTTATATTTtatgagaaaaaataaataaattaaacacaTTGTCTCCCCTCATCTGCTCCTGACTGCATCtgctgccatagaaatagaatgactagaacgGATGGTGGCATAATGGCAGGACTGGCGGCCATGTTGAGTGTCCCCATAGGAGCAAAGCTAGGTTATAAAATTTGAAGGTTAAAGACACCGGCTTCACAATAATGTTTGAGGTTCTACCTCTCTGAATCAACCATGTGATCAGCTCAGGTATTGGAGCTACGCTGCCTCGGCAGAAGGCAAGCTGTCTGAAACAGATCATGAGGTTGGTAAGGAAATAAAATAGCATTGAAGCTAATGTGAGAAAAGAGACAACcatctagccagctagctaacgtctgGGCTGAAGATTACAAGGTTAATAAGACAGAGGGGTTCTAATATCCCATAATTTGGCGATTCATGGGACCGGCGTTGCTAATTAGCAAGTAGTTTTCAACTGAGCTGGTCCCatgaatttgttttattttcaaaTCCTTCCTGATGGGAGTTATTACGTTGTTgtaaccttgttttttttttaaccttggagcaaagcaggaagtaaaagcaggaagtgtaccctgTGCTGTTATTTGTTGATTCAACTCTACAGACGTTACAAATAATACATTCCATTGTTTGAGCCACATCAGTGAACATCATTTGAataaacattctacattaccatggaaattattacatcacaataccaggcagccatgagtttaccagtcatattaccagggttagaggttccaagcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951692 lncRNA upstream 5707 7797108 ~ 7797573 (+) True G1704629
TU1951690 lncRNA upstream 9976 7793078 ~ 7793304 (+) True G1704627
TU1951686 lncRNA upstream 17294 7785629 ~ 7785986 (+) True G1704623
TU1951660 lncRNA upstream 58391 7744413 ~ 7744889 (+) True G1704598
TU1951607 lncRNA upstream 98566 7662326 ~ 7704714 (+) True G1704549
TU1951722 lncRNA downstream 12349 7818029 ~ 7818399 (+) True G1704645
TU1951707 lncRNA downstream 27631 7833311 ~ 7834957 (+) True G1704634
TU1951709 lncRNA downstream 31499 7837179 ~ 7839343 (+) True G1704636
TU1951728 lncRNA downstream 40805 7846485 ~ 7846694 (+) True G1704650
TU1951730 lncRNA downstream 45231 7850911 ~ 7852297 (+) True G1704652
XM_036958454.1 mRNA upstream 228522 7561344 ~ 7574758 (+) False LOC118942991
XM_036956712.1 mRNA upstream 241305 7527556 ~ 7561975 (+) False LOC118942849
XM_036956732.1 mRNA downstream 67935 7873615 ~ 7877834 (+) False LOC118936573
XM_036956731.1 mRNA downstream 67935 7873615 ~ 7878590 (+) True LOC118936573
XM_036956730.1 mRNA downstream 76569 7882249 ~ 7883321 (+) True LOC118942851
XM_036956483.1 mRNA downstream 119336 7925016 ~ 7943584 (+) False yt6j
XM_036956485.1 mRNA downstream 119336 7925016 ~ 7943584 (+) False yt6j
TU1951624 other upstream 145411 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 257436 7527934 ~ 7545844 (+) False LOC118942849
TU1951575 other upstream 258122 7527803 ~ 7545158 (+) False LOC118942849
TU1951729 other downstream 43880 7849560 ~ 7850120 (+) True G1704651
TU1952417 other downstream 733248 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 733248 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 738292 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 738292 8543972 ~ 8561212 (+) False LOC118942994

Expression Profile