RNA id: XM_036956729.1


Basic Information

Item Value
RNA id XM_036956729.1
length 4047
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110516645
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7837150 ~ 7899175 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAACTAATGCCTTGGCTTGTGCAGTAGTAGGCCTAGATATAAATTATGACATTAGAAAACGGACAGATGGGtttgtagcctactgtactgGATGTGCTGTAATTGACAGTTGTTGATTGTctggaaaaataataataaacacttATAAATAATTGCATCTAGAACTTGGAGGAATCCTGAAAACGGAGAAAAAAAACGTCTCGTACCAATTCCGTCATCTTCGGAGATCACCGGGAGCTCGCACCGAATATCCGCTGCcccgcctcccctcccctcttcccgtCAGCTCGAGACCAACGGAAACATCATAGGCCTGTCCGGCTGATCCACACGCGGGAAACGTATCTAGGAGACatatatacatttgatttgttacaACGTGCCTGGTATTTGACTGTTTGCTAGAATGGAAATGTTCacccaaaatatcaatttatGAGAAATCGACGTAAATGGTCACTTCTCCTTTAAATGTTCTCTGTTGTTCTGCATAATATCCAGGAAGTGTGAGAGCATTCCTCCCCAGCTGATCCAGAGAGCCAGACGGAAGTCTCCTACTCAGAGGCTTTAACATTCAGCGGTGACCAGACAAGGGGACCGTGTTATTGGTAAATATCGTCTGGAATAAATCCCGTGGATTACCACCCGTGGGTGGTTTTAGTGGAGACACGGCCCGGTATCCCCACCGCCTCTGTCTTTCTCCCGGTCGGTCGGGTGGATCTGCCGTGGTAGGACTGTCATGAGCCCGGGCTGGGAATGGCATCCTCTCCCAGTGTTTGTAAGAAGGTCGGGCCGGTGGAGGAGGAGAACGGAGAACCGGATCGTTCTCTACAAGAGATGTTGAAGGCGATAGCCGACGAACGGAACCGTCTTACTGTCAGACAAGAAACTAGTGGACTTGGGTGTTTTAAGGACGACCGCATCGTGTTCTGGACATGGATGTTCTCCACGTACTTCATGGAGAAGCTGTCGCCGCGGGAACAGGACGACATGTTGTTTTACGTCCGCAGGAAGCTGTCATACGTCAGCCCCGACCAATCAGAGGGCAagaaggtagatgtggagGTGTACAGGAGAGACTCTAAGAAGCTTCCAGGTTTAGGAGAACCTGACATCGACTGGGAGGAGAGTGTTTACCTGAATCTGATCTTAATGAAGCTGGACTATGTGGTGACGTGTGCCGTCTGCACGCGCTCAGACGCAGGAGACATCCACATTCACAGGAAGAAGTCTCAGcaAGTGTATGCGTCACCAAGTAAACACGCCATGGACAGTAAAGGAGAGGAGTCTAAGATGAGCTACCCCAACATCTTCTTCATGATTGACAACTTTGAGGAGgtgttctGTGACATGACGGTAGGCGAGggggagatggtgtgtgtggagtTGGTAGCCAGTGATAAGAGCAACACGTTCCAAGGAGTCGTCTTCCAAGGTTCCATCCGCTACGAAGCTCTGAAGAAGGTTTACGACAACAGAGTGAGTGTGGCAGCGAAGATGGCCCAGCGCATGTCGTTCGGCTTCTATAAGTACAACAACATGGAGTTTGTCAGGATGAAGGGGCCGCAGGGCAAAGGTCACGCTGAGATGGCGGTCAGCCGGGTCCCGACCGGAGACACGTCCCCCTGCGGCACAGAGGAGGACCTGGACTCACCCCTACACGAGAGGGTGACGTCGTTCAGCACCCCTCCCACCCCGGAGAGGAACCGCCCCTCgttcttctccccttctctccgtcGGAAGGTCCCCAGGAACCGTATCACTGAGATGAAGAAGAGTCACTCAGCCAACGATAGTGAAGAGTTCTTCAGGGAAGAGGACGACGAGGATATCCTGGAGGTGAGACAGAAGCCCATCCTGATGACATAGCAGATCAGAGCTCCAGTCCTCCTAACTGCCCCAGAGCCTCCCTACGAAGTGCCTTCCTGCATCAGGCACCACTACAAACCAGTGGTGAGATGGAAAACTACAGCAACACTACCACCATCtgttggtgagatggaggaagtACAGCAACCCTACCACCATCtggtggtgagatggaggaatTACAGCAACACTACCACCATCtggtggtgagatggaggaatTACAGCAACACTACCACCATCtggtggtgagatggaggaatTACAGCAACACTACCACCATCTGGTGGCGAGACAGAGAACTACAACCAAACCTGGAGTCAATGGCAAGAGGTGACTAAAAAACAACTTTGGAACAATGAAAACCAGCCAATCAAAAAAGTGCCTCTTCCCTGTCATGTTCCTGCTCGATGAGGATTCGCCGGTGGGTGTGAGGCGGTCGCCAGGGAAACGGGCATAGCAACCCACCTGTCCTGTCAGGATCACAATGGTCGTGAAGTGCAGTACCATTGGCTGAACTCTGACCTGGAACTAAAATTATTTAGAATGTCTCTGGACGAATCTAAAATGGAACTCTCTTCCCAGTTTAGTGCACTAACGTTGGCCTTAGCCCTGTGTGgactctgatctaaagtagtgctctgtaaaagggaatagggtgccattttggacaacgTCTCCTGTTTTCTTGTAAATATCCTGCTGCTTAACTATTCACTGATAAGCCTTTAGGAAAGGTTACGCTTCTTCTGATGGGAACATAAAGCTTCTGTCTGTTTTGTCGTTGcgtgtttgtgtttctgtctgCGAGGCGGGGAAGGTTAaagggagtgtgtgtctgtgtgtctaacaTCGTTGTCTAAGTCCCAGGGCTTTGTGGATGTGCTGCCTTCAGTCTATCAGCACACCACTGGCACATAAAGGATGTTACTCTGAGACCAGAAGGGCACCGTATTGACCAGGGAGTAGGCTTCCATCAGGCTCACAGTCTGGAGACCCTTCAACTCTTCAGTTTAACGTGACGAACTTTCAACAGGGAACCGAAATTATCATCTATATAGAAAAATTAAAAAACAATGATGTggaaattcacacacacacacacacacgtgtgagaAAGTTTTTCCTCAGCACTGGAACAAGATGGCTGAATATAGAAAcgcagggcctgctgatactcaGCTTTAGTAGCGGTAAGATACTAAACCCTGTTTCTGTCTGGTCTCGTCCCCAGGCTGCTGTTATGTAGAGCCTGGTGACTGTGGGACTGTCTGGAACTAAGGGGGTGTGGATTTACTGAGTGATATGCTAATCAATTCCAATTCTGGAGCGACTCACACGACTatgaggagaagggggagggagcgaGCCTGGGATAGTTGTATTTATGGAAGCCCATTCCTGCCACACAAAATATAATTAAATGTCGACACTGCCTCAACATTTTGAGCTTCTAACTAAAACCATTTAGACAGaacatacatacactacatggacaaaagtatgtggacacctggtcgtcaaacatctcatttcaaaatcatgagcattagtATGGAGTTGGGTCTCCCCCAActggttctgtgcaggccagtcaagttcttccacaccgatctcgacacaCCACTTTTGTATGGACCTgactttgtgcacagggggcattgtcatgctgaaacaggaaagggccttccccaaactgcttcCATAGTTAgttagtttggaactcggtagcgaGTGTTGCCAcgggcttcagcactcggcggtcccgttctgtggtCTACCacagccgttgttgctcctagacgtttccacttcacaatagcagcacttacagttgaccgggggcagctctagcagggcagaaatttgaccaactgacttgttggaaaggtgccacattgaaggtcactgagctcttcagtatggccattctactgccaatgtttgtctatggagattgcatggctgtgtgctcgattttatacacctgtcagcaacgggtgtggctgaaatagccaaatccactcatttgaaggggtgtccacatacttctgtgtaTATACATACTCTGTGTTTCTTCATTTGTAGCATTATGTGGTGAATTATATGAGTCCATTGCTGAACTGGCATTTGTCCCAACACTTTATATTGTTTATTAAAATAATTGACACAAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952066 lncRNA downstream 14747 7820090 ~ 7822403 (-) True G1704900
TU1952065 lncRNA downstream 17297 7818815 ~ 7819853 (-) True G1704899
TU1952055 lncRNA downstream 31211 7804169 ~ 7805939 (-) True G1704889
TU1952052 lncRNA downstream 33799 7802012 ~ 7803351 (-) True G1704887
TU1952045 lncRNA downstream 49232 7786805 ~ 7787918 (-) True G1704881
TU1952098 lncRNA upstream 471 7899646 ~ 7900224 (-) True G1704922
TU1952099 lncRNA upstream 2051 7901226 ~ 7962861 (-) True G1704923
TU1952101 lncRNA upstream 4881 7904056 ~ 7904596 (-) True G1704924
TU1952104 lncRNA upstream 34182 7933357 ~ 7934313 (-) True G1704926
TU1952108 lncRNA upstream 61132 7960307 ~ 7960992 (-) True G1704930
XM_036956717.1 mRNA downstream 68847 7590528 ~ 7768303 (-) False LOC118936572
XM_036956720.1 mRNA downstream 68847 7590528 ~ 7768303 (-) False LOC118936572
XM_036956718.1 mRNA downstream 68848 7590528 ~ 7768302 (-) False LOC118936572
XM_036956719.1 mRNA downstream 68848 7590528 ~ 7768302 (-) False LOC118936572
XM_036956721.1 mRNA downstream 157272 7590528 ~ 7679878 (-) False LOC118936572
XM_036956756.1 mRNA upstream 2537 7901712 ~ 7924740 (-) False LOC110517214
XM_036956757.1 mRNA upstream 2537 7901712 ~ 7924740 (-) False LOC110517214
XM_036956758.1 mRNA upstream 2537 7901712 ~ 7924740 (-) False LOC110517214
XM_036956759.1 mRNA upstream 2537 7901712 ~ 7924740 (-) False LOC110517214
XM_036956760.1 mRNA upstream 2537 7901712 ~ 7924740 (-) True LOC110517214
TU1951911 other downstream 69134 7657548 ~ 7768016 (-) True LOC118936572
TU1951902 other downstream 215309 7601802 ~ 7621841 (-) False LOC118936572
TU1951903 other downstream 235796 7588536 ~ 7601354 (-) False LOC118936572
TU1951803 other downstream 455691 7379889 ~ 7381459 (-) False LOC118942848
TU1951838 other downstream 471010 7365547 ~ 7366140 (-) True G1704726
TU1952105 other upstream 41974 7941149 ~ 7962240 (-) True G1704927
TU1952076 other upstream 89526 7988701 ~ 8002994 (-) True LOC110515713
TU1952160 other upstream 127114 8026289 ~ 8046882 (-) False pthlha
TU1952161 other upstream 127114 8026289 ~ 8045776 (-) True pthlha
TU1952844 other upstream 632560 8531735 ~ 8532803 (-) False G1705386

Expression Profile