RNA id: XM_036956731.1


Basic Information

Item Value
RNA id XM_036956731.1
length 1113
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC118936573
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7873615 ~ 7878590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGCTTCCCTGATAATAAATCAGCCAATCATGATCAACCCACCCCTTCTAAAAAGAACACAAAAAGGATGGATAAGAGTCACAAGCACATTATTTTTCTTGTCGGGCTGAAAACCAACTGGAAAAAGACAGCTAACCGTCCCAACAATGCATGCCCTGAGGATTCTCCATGTTTTGCTGCTGTCAGTAGCAGTTCATTCTAAGGGGCTGATGTTCCAGCCTCTGGACTGTGCTGATATCTACAACGACGGCTCTAAGACCAGTGGTGTCTACAGGATGTACCCTGCTGGACCCAACTCTCCTCGATACGTCTACTGTGATATGGACACCGACGGAGGGAAATGGACTgTGTTTCAGAGGAGGATGGATGGAACAGTGAACTTCTACAGAGGATGGGACCAGTACAAGAACGGCTTTGGACACGCAGCAGGAGAGTACTGGCTGGGTCTGGACACCATCTACCTCCTGACCCTGAAAAAGAATTACGAGTTGAGGGTGGACATGGAGGACTTTGACGGACAGAAAGCCTACGCTTTCTACTCCTCCTTCGCCATCTCTCCCAAAGTCACAGATCCTGAACTGGATGGCTACAAACTCCAGGTTACTGGCTTTAAAGACGGAGGAGCAGGGGACTCTCTCACCTATCACAGCGGTATGAAGTTCTCCACCTTCGACCGAGACCAGGAAATCAACTGTGCAGTCAACGCGGTCGGAGGTTACTGGTACAACGAGTGTTACTTCTCAAACCCAAACGGTCTTTATACATGGGGATTGAACTCACAGATTGGAGTCAACTGGAGGGGATGGAAGACCTTCTACTCTGTGAAAGCCATATCCATGAAGATTAGGCCTGTGAACCTGTGAAGGTCCTTCACAAAGTCCTTTAGTTAAAACATGGTTATATGAACTGCagaataatggctggaacagagcgaatggaatggcatcaaacacatggcatTAAAACGTAAACCACTTTTGATGCATTTGATACTACTCCAGCTATTACGCTACATACAGTCagtaccacgagcccgtcctccgcAATTACGGTGCCATCAACCTCCTGTGCCTCTCACTCACCTGTGGTTCGGAATAAATTGACCACCCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951730 lncRNA upstream 21318 7850911 ~ 7852297 (+) True G1704652
TU1951728 lncRNA upstream 26921 7846485 ~ 7846694 (+) True G1704650
TU1951709 lncRNA upstream 34272 7837179 ~ 7839343 (+) True G1704636
TU1951707 lncRNA upstream 38658 7833311 ~ 7834957 (+) True G1704634
TU1951722 lncRNA upstream 55216 7818029 ~ 7818399 (+) True G1704645
TU1951712 lncRNA downstream 19684 7898274 ~ 7899551 (+) True G1704639
TU1951739 lncRNA downstream 49859 7928449 ~ 7928828 (+) True G1704659
TU1951705 lncRNA downstream 63362 7941952 ~ 7943574 (+) True yt6j
TU1951751 lncRNA downstream 92729 7971319 ~ 7971778 (+) True G1704671
TU1951756 lncRNA downstream 97176 7975766 ~ 7976717 (+) True G1704675
XM_036956723.1 mRNA upstream 43700 7800667 ~ 7829915 (+) False LOC110510398
XM_036956730.1 mRNA downstream 3659 7882249 ~ 7883321 (+) True LOC118942851
XM_036956483.1 mRNA downstream 46426 7925016 ~ 7943584 (+) False yt6j
XM_036956485.1 mRNA downstream 46426 7925016 ~ 7943584 (+) False yt6j
NM_001160647.1 mRNA downstream 46459 7925049 ~ 7943583 (+) False yt6j
XM_036956762.1 mRNA downstream 124825 8003415 ~ 8009468 (+) False LOC118942853
TU1951729 other upstream 23495 7849560 ~ 7850120 (+) True G1704651
TU1951624 other upstream 215746 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 327771 7527934 ~ 7545844 (+) False LOC118942849
TU1951568 other upstream 328457 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 332965 7527934 ~ 7540650 (+) False LOC118942849
TU1952417 other downstream 660338 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 660338 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 665382 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 665382 8543972 ~ 8561212 (+) False LOC118942994
TU1952595 other downstream 971808 8850398 ~ 8851107 (+) True G1705229

Expression Profile