RNA id: XM_036956758.1


Basic Information

Item Value
RNA id XM_036956758.1
length 2433
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC110517214
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7901712 ~ 7924740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGCTCATTTCTTTCCGTAGTTGAAGTCAGAACGCTAATCTCTTTCCGTAGTTGAAGTCAGAACGCTAATCTCTTTCCGTAGTTGAAGTCAGAACGCTAATCTCTTTCCGTAGTTGACGTCAGAACGCTAATCTCTTTCCGTAGTTGAAGTCAACTATTTGATAACATTTTGTTGACCATCTAGCTTCTGTCAAAGCCTCTTCTACTTCTCGATTGTAATACGTGGAAATCTTCAACCATCTCTACTTGCAATTAAGACCTCTTTAGTTAACATGAACTGTATGGTGTGAAATGATTAAGGCTTGCAATAAGTTAACAAGAGACAACAACTAAACTAAACATGAAACTACGTGTGAGGATAAACAAGCAGACCAGCCGGGTGAAGCTGGAGGGAGAGGagcccactctgacagagctcaacgTTCAAATCAGAGAGATCCTTCTGCCTTCACATGGCCTCAGCCCAGACACGGAGTTCACCTTGTCCCTGAACGGCTCAGATCTTCTATCTGACTCTGGTCAGACTTTGTCCTCCTGTGGCATCGTCACTGGGGACCTGGTCTGTGTCATCTTGCCTCCATCTGTGGCTGTGCCCTTCGCTGCCCCTGCTCCCTCAGCCCGCCAGGCTGTGCCCTCAGGCTCCTCTGCCCCCTCCGCTGCCCCTGCTCCCTCAGCCCGCCAGTCatccagcaacagcagcagcagcagtagtagtagtcctGGGCTGTACCAAGCTGTACACCCACCAGCCCAACGCTCCAGTGAGGCCAGCACGAGCAAGGGGGCGGAGCCTCAACAGGAAGtggtcagagaggaggaggagcaggaagaagAGGCAGGTCAGTGGGTGTGGGAGCCCATGCTGTGTGGGGAGGCAGAAGGAGGGAAGGTACCCCATTCCCTGGAGGTTCTGTACCACCAGGCTCAGAGCAGCAGTACCTGTGATTCCCTGATGGTGGCAGTCCACCTCCTGATGGTGGAGACTGGCTTCCTGTGTCAGggctctGAGGGGCGTCCTGGTGAGATGCCAGCTGGGTGGAGGGCACCAGGAGGGCTGTACAGACTGCAGTATGCCCATCCTCTCTGTGACGACAGCCTGGCCTTGGTCCTAGCTGTCCCCATGGGACCCGTTCTGGTTATCAACGGTGACAGTGCAGCGGCCGTCTACACAGAGCTGAGGAAGTTGTCCCGGGTCTTCAAAGACCAGCTGGTGTATCCTCTGATAGCTTCAGCCAGAGAAGCCATGGCCCTGCCAgcagtgtttggcctgccagtcCTTCCTCCAGAGCTGTTACTGAGGGTCCTGAGACTGCTGgatgtctcctctctcctggcccTCTCCTCGGTCAACAGACACCTCCACCAGACCACCACAGACCCGGCCCTCTGGAGACACCTCTACCGCAGAGACTTCCGAGACGGCCAGGACCACAGCAGAGCCAGAGACACTCAGTGGAGAGAGCTCTACAAGAAGAAGTATAAGTGGAGGAGAGAAGCAGCCAGTTACCGGCACCACATGCCCCGTTACCACCCTGTCCCCCCACCgctctaccccctccaccccctccccaaCAACCCCTTCCCCTTCTACCCGCCTGGCATCATCGGTGGGGAGTACGACCAGAGACCTGGCATCCCCGGTGGTATTCTGCCCCGCCCCCGCTACGACCCTATTGGTCCGCTCCCGGGTCACGATCCCACAGCAGGAGGGCTGATTGGACGAAGGGGGCTGAGACCTGCTGGGAACCGGCCGGCTGACATCAGAAGAGGGTTCATATGACCTCCCTGACCAGTGACCTCTAGTGGTGGTGTAGGAGTATGACCACCACACAGAGAAGCTTAAATAAAACAGAGATGTTGAAGACTGACTGATTAGCCTACCTTAAATAAGGTGCTATTGTCACAGATAAATGGCGTTGTTCGGTCTATAAACACTAACCCTCAGCCAGCCTGCTTATTATCCCCTAAACCTCATCCAGGTGTTTTTTATAAACCCTATCCTTGACCCAGAATCAGCTTTTAATAGTTCatgttctcctgtgtgtgtttagtaAGTGATGAGGTCAGATCATACCGATCTGCTATCTTCATTTGATCTCTCTGTTGGAAATGTAAAGTTTTCCCGTGAGAAACCGGTCAAATTTAAGATAGTAGATCTGTAAGGGTGCCTGGGGGATTGAGGTGGCCGTTTCGATCTTCCACCATTCACTATGAAGAcattttgtacttgtttcctcgcAGACGAAAAGCTGTAAATAAAATGAGAAAATGGCAATCGACTGGTTTTTAGCTGTGGTCATATTTGAGCCCTCAGTCTGTCTCTGAAATCCAGACTGTTCAGGGACGATTCAATAGTCATGTACACTGAGctacaatataaacacaacatgtaaagtgtctcTATGTTTtatgagatgaaataaaagatcccgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952098 lncRNA downstream 1488 7899646 ~ 7900224 (-) True G1704922
TU1952097 lncRNA downstream 5585 7894938 ~ 7896127 (-) True G1704921
TU1952096 lncRNA downstream 7024 7894421 ~ 7894688 (-) True G1704920
TU1952095 lncRNA downstream 7398 7893991 ~ 7894314 (-) True G1704919
TU1952094 lncRNA downstream 9092 7890872 ~ 7892620 (-) True G1704918
TU1952104 lncRNA upstream 8617 7933357 ~ 7934313 (-) True G1704926
TU1952108 lncRNA upstream 35567 7960307 ~ 7960992 (-) True G1704930
TU1952111 lncRNA upstream 38758 7963498 ~ 7967733 (-) True G1704933
TU1952113 lncRNA upstream 39109 7963849 ~ 7967522 (-) True G1704934
TU1952119 lncRNA upstream 58780 7983520 ~ 7983812 (-) False G1704938
XM_036956729.1 mRNA downstream 2537 7837150 ~ 7899175 (-) False LOC110516645
XM_036956728.1 mRNA downstream 2560 7837150 ~ 7899152 (-) False LOC110516645
XR_005038487.1 mRNA downstream 11439 7888911 ~ 7890273 (-) True LOC118942852
XM_036956717.1 mRNA downstream 133409 7590528 ~ 7768303 (-) False LOC118936572
XM_036956720.1 mRNA downstream 133409 7590528 ~ 7768303 (-) False LOC118936572
XM_036956754.1 mRNA upstream 20758 7945498 ~ 7987023 (-) False LOC110515713
XM_036956755.1 mRNA upstream 20758 7945498 ~ 7987023 (-) False LOC110515713
XM_036956753.1 mRNA upstream 20758 7945498 ~ 8003040 (-) False LOC110515713
XM_036956733.1 mRNA upstream 20758 7945498 ~ 8003041 (-) False LOC110515713
XM_036956734.1 mRNA upstream 20758 7945498 ~ 8003041 (-) False LOC110515713
TU1951911 other downstream 133696 7657548 ~ 7768016 (-) True LOC118936572
TU1951902 other downstream 279871 7601802 ~ 7621841 (-) False LOC118936572
TU1951903 other downstream 300358 7588536 ~ 7601354 (-) False LOC118936572
TU1951803 other downstream 520253 7379889 ~ 7381459 (-) False LOC118942848
TU1951838 other downstream 535572 7365547 ~ 7366140 (-) True G1704726
TU1952105 other upstream 16409 7941149 ~ 7962240 (-) True G1704927
TU1952076 other upstream 63961 7988701 ~ 8002994 (-) True LOC110515713
TU1952160 other upstream 101549 8026289 ~ 8046882 (-) False pthlha
TU1952161 other upstream 101549 8026289 ~ 8045776 (-) True pthlha
TU1952844 other upstream 606995 8531735 ~ 8532803 (-) False G1705386

Expression Profile