RNA id: XM_036956750.1


Basic Information

Item Value
RNA id XM_036956750.1
length 6821
RNA type mRNA
GC content 0.52
exon number 28
gene id LOC110515713
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7945498 ~ 8003041 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACGTTTCCCGTTCCGTTGAATCGACACGCCGCAAGAAATCGACTCCTGAAATTCCTGTTCTGAACCCTTAGCCGAGCTAAACAGACAAACTAGAAGTGCTTTTTTGGGTAATTCCTGACGATTTAGGGATGTACTGACGGACGGAGACGATGAAGATAAAAGTATAACAATAAGATGTGCCTGGCCTGCCGGAGGGCAGCAACAGAAGACAGTGAAACTACAGCGGAGGGCAGCAACAGAGGACGGTGAAACTACCGTGGAGGGGAGCAACAGAGGACGGTGAAACTACCGTGGAGGGGAGCAGCAGAAGACCTTCTCATGGCCTGCCAGTCTGTCTCCATCATCAACATGGACGAGCAGGCCCTGCTGGGGCTCAACCCTAACGCAGATGCCTGCTATAGGCAGAAGGCGATGGTGTATTTTGAGCAGTTGAAGGAGTCCCAGGATGCCTGGGAGGTGTGTGCAGAGGCCCTGGCTAAAGGCATTTACAGTGACGACCATGTGAAGTTCTTCTGTTTCCAAGTCCTGGAGCACCAGATCAAGTACAGACATGGAGGGCTCAGTCCTGCCCAGCAACAGCTGATCAGAGAAACTCTGATGAAGTGGCTGCAGGGTCAGttaATGAACTCCCAACCAGAGAAGCCGTTCATCCGTAACAAGGCAGCCCAGGTGTTTGCTCTGACCTTCGTGATGGAGTACCTGACCCACTGGCCCAAGTTCTTCCACGACCTGCTGTCTCTAGTGGGCCTGAACCCACACGGGGTCGACGTCTACCTCAGAACACTGATGGCTATCGACGCTGAGGTGGTGGACAGAGACATCCTGCACTCCCCTGAGgagGTTCGTAGGAACACATTAATAAAAGATGGTATGAGGGAGCAGGTCATCCCCAGCCTGGTTGAGTCCTGGTACCAGATCCTCGGGGCCTATCAGCAGTCTCACCCTGAGATCACCTGTCAATGTCTGGAGGTAGTGGGGGCATACGTCTCCTGGATAGACCTCAACCTCATTGCCAACGACAGgTTTGTGAACCTGCTGCTGAGTCAGATGTCTGTGGAGGACCTGAGAGAGGAGGCATGTGACTGTCTGTTTGAGATTGTCTGTAAAGGAATGGCCCCGACAGACAAGACCAAGCTGGTCGAGTCCCTCTGTCAGGTCCTGCAGTCGGCTGGCTTCTTCAACGTGGAccagGAGGAGGATGTGGACTTCCTGGCTAAGTTCTCCAGACTGGTGAATGGGATGGGCCAGTCTCTGGTTCTGAGCTGGACCAAACTGGCCAAGGGGGGCGCCGTGAAGGAAGCCGCCGAGGCGCTGCGTGCCCTCGAGACCAAGGTTCCTCTGCTCCTCCAGCTACTGGTCCACGACGACGATGACATCTCAGCCAACATCGTAGGCTTCTGCTACGACTACCTGAACGTACTCAAACAGGGGTCCGAGTGGCAGAGTCACATGCCtcaggtagggagaggaggacaggaggcaATTGAAGAGTACTGGGACTCAGACAAGtTCCCGCTGCTGACAGACCAACAGAAGACTCACGTTGAGGACATCATGTTGGCCGTCATGAAGAAACTAACTTATGATGAAGAGTACAACTTTGACAACGAGggaGAGGATGAAGCGATGTTTGTAGAGTACAGGAAACAGTTGAAGATGCTGTTGGATCGCCTGGCTCAGGTGTCTCCTGACCTGCTCCTGGAAGCTGTAGGCAGAGTCTTCAACAACACCATACAGCGTTGGCAGACGGCGTCCTtcatggaggtggaggtggcCATCAGGCTGCTGTACATGCTAGGAGAGGCTCTGCCTGCGTCTCACGGAGCTCACTTCTCTGGCGACACGGCCAAGACCTCCGCCCTGCAGGATATGATGAGAACGctggtctcctctggtctcaGTGGTTACCAACACACGTCTGTGTCGCTGGAGTTCTTCGAGACGGTGGTTCGTTACGACAAGTTCTTCCTGGTTGAACCGCAGCACATTCCTATTGTCCTGATGTCCTTTCTGGACCATCGCGGTCTGAGACACAGCAGTCCTAAGGTCCGTAGCAGAGTGGCCTACCTCTTCTCACGGTTCGTCAAGACACTGCATAAACACATGAACTCCTTCATTGAAGACATCCTGTCCAGGATACAGGACCTGCTGGAGCTAGCTCCTCCTGAGAACGGTTTCCCTGCGCTGCTGACCAGCGATGACCAGCTGTTTATATTTGAGACGGCGGGGGTGTTGATCGTCCACGGAGAGAGTCCCGCGGAGAGGAAGCAGGCGCTGATGAGATCCCTGCTGACCCCGCTGACCGACGCCTTCCGTCTGCTGCTGGCCAAACTGGCctctgagagggaggaggagaggcaggctgCGCTGGCCGACTGTCTCAGTCACGCTGTTGGCTTCGCTAGTCGTACCAGTAAGGCGTTCAGCAACAAGCAGACAGTGAAGCAGTGTGGATGTACTGAAGTCTACAGAGACTGTCTGCAGACCTTCCTGCCTGCACTGAGCTGTCCTGTCCAGAGGGGGTCTCTGCGTAGCGCTGTCCGCTCCTTCCTTCATCGCATGATCATCTGTCTCGAAGAAGAGGTCCTGCCCTTCGTCCCGGCGGCATCGGAGCACATGCTGAAGGACTGCGAGGCCAGGGACCTGCAGGAGTTCATACCCCTCATCAGTCAGATCACCGCTAAGTTCAAGgaccAGGTGTCTCCTTTCCTGCAGCAGGTGTTCATGCCTCTGGTCCTGGCCATCTTTGAGGTGTTGTGTCGACCTGCTGAGGACAACGACCAGGCAGCAGCTCTGGAGAAACAAATGTTACGTAGAAGCTACTTCACCTTCATACAGACGATAACCTCCAGCGGGATGAACGAAGTCCTGGCCAACCAGGGTGTTGAGAACGTAGAGCGGGTTCTGTTCACCATCATCCAGGGAGCTGTCGACTTCCCCGACCCCATCGCCCAGAAGACCTGCTTCATCATCTTGTCCAAGCTGGTGGAACTCTGGGGAGGTAAAGACGGTATGGCTGGTTTCCCAGACTTCATCTATAAACACATCGTCCCAGCATGCTTCCTGGCTCCTCTCAAACCATCCTTTGATCTCACGGACGCTCAGACCGTCCTGACGTTGTCAGAGTGTGCTCTGACGTTGAAAATGATTCATCTCAGAAGGGGTCCGGAGTTTATCCAGTACCTTCAACAGGAGTACCTCCCTTCTCTACAGGTGTCACCTGAAATCACACAGGAAGTGTGTCAAGTGCTTCAGCAGCCAGACGCCAAGGTCCTCAAAAACTACATGAAGgctTTCTTTCAGCGAGCCAAACTGTAAATACAAACCGAGCTGGAAGGATTGAGAGAGGACACTGGAAACTGAGAGAAGACTGGTAGTGAGAGAGTACCACTCACTACGGACAGCCGGACGTAGAGAGATCTTAAAGACGGAGAGCTTAGCATAGGAGCGGCCTTAGCACTTCTGAAGGTAACTGCATAACCTCGCCCATCCTGTCCACGTGGGAGGGAACGGAGCCAAGACACAAGGACACGAGTGGTCAAGGAGGCTTTCACTGGGGTGACCACACCCCCCTCCACTGATCCAGGCCCAATCAAGGACGTGCTCTCCATCTGGGGTGGCACCCTGGTCAAGTGAAGATGTGATTGGTTGGATTCTCTGCAAGACAGGAAGTAAACTAGAGTATAGAGGAAGGCTTATGGAACGAGGCTTCCATAGTAGAATACCAAGTATCCTTTAACAGGCCTGAAGCCTCATCTGTCTGTTGGTAATGATCCAACAATGACCTGAACACAGTCTAACGATTAGGATTTAttcatttataaaaaatgtattttttttcttaaaaaaaaaaaaaaaatgttttcaagaTGTCTTTGATTTGAGTGGTTGAACGTGGAGGTTTTGTTTCTCTTTGCCCTGTGAATGAATTGATGGACTAAATAAAAGGGCTTGACATATTTTTCTAGATTTTTCTGTTGTGGAAGAAATGGGATGGTTGGGGTAGGATGTGTTTTAGTTTGACGTGATATACAGGACAGACCTCTAACGGGAGGATGACAGACCTCTGTAACGGTGGATGACAGACCTCTGTAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAATGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTTTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGATGTCCTGAACGTCAGGGCCTCTTCATGGTGTTTCAGTAGGAGTGCTGATGGAGGATGTTATGAATAAGAAGAGGTCGGACTGCTTCTAGATCAGATATGCTTTATGAACTCAAGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGAAAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGAAAGAATAGGACCTGCCCTGACCAaggttctcctctaccctcagtcCCCTCAGAAAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGAAAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGACAGAATAGGACCTGCCCTGACCAaggttctcctctaccctcagtcCCCTCAGAAAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGAAAGAATAGGACCTGCCCTGAACGAGGTTCTCTACCCTCAGTCCCCTCAGACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGAAAGAATAGGACCTGCCCTGAACAAGGTTCTCTTCTACCCTCAGTCCCCTCAGAAAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagacAGAATAGGATCTACCCTCAGTCCCCTCAGACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagacAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagacAGAACAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGACAGAATAGGACCTGCCCTGAACAagGTTCTCTACCCTCAGTCCCCTCAGACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGACAGAATAGGACCTGCcctgaacaaggttttcctctaCCCTCAGTCCCCTCAGACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGACAGAATAGGACCTGCCCTGACCAaggttctcctctaccctcagtcCCCTCAAACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGAAAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagacAGAATAGGACCTGCCCTGAACGAGGTTCTCTACCCTCAGTCCCCTCAGAAAGAATAGGACCTGGTTTAACAAACATCTGTTTGTGATCTAAAAAAAATCAGACATTGTCAGGAACTGCATCTCAGCTGTACTTACTGTCTGTTGGTGGGGGGCGCTTAACAGAAGGTCCACTATAGGGCCCTGGGCAACATATAGGGAATGATGGTGGGGGGGTGACTGAGTGAAGTCATCCACTCTGCCCTCAACAGGAGAACTCTGGACCAGACTGACTAGCGAAGTGtttaggggaggggggggtgacTGAGTGAAGTCATCCACTCTGCCCTCAACAGGAGACATCTGGACCAGACTGACTAGAGAAGTGTTTACCCCGGTGGTCGCTACGACACCGTCACTTCCAGAAGGAAAGTATTTTAATAGTGGATCAAAATGTAAATATGACGTTTTATTTTAAAGAAGGAATAACATGTTGGGATGTAAATAACTTAGTTTGatggtttgtttttgttgttgttgttgttttgaactTCTGTTCCTTTTCTGAAGAGATGTAATGTTAAAGATTAGTCCGTGTCGTCTTTACAGGTTTGAGCAGCATGATCCATAGGACTGACTATAACCGGGACAACAGCATTTTATACCCAACTGTTACTCACAATTCAGCTTGACCAATGAGGACATGTGATTGGTAATGCTAACCTGCCTGTTAACTATATACTGAACAAACATGTCAATGATTTAAACTCCGTTACAGTTCATtaaatgaaatcagtcaattgaaataaattcattagatcGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952104 lncRNA downstream 11185 7933357 ~ 7934313 (-) True G1704926
TU1952101 lncRNA downstream 40902 7904056 ~ 7904596 (-) True G1704924
TU1952098 lncRNA downstream 45274 7899646 ~ 7900224 (-) True G1704922
TU1952097 lncRNA downstream 49371 7894938 ~ 7896127 (-) True G1704921
TU1952096 lncRNA downstream 50810 7894421 ~ 7894688 (-) True G1704920
TU1952081 lncRNA upstream 414 8003455 ~ 8004980 (-) False G1704909
TU1952085 lncRNA upstream 414 8003455 ~ 8006732 (-) False G1704909
TU1952079 lncRNA upstream 1435 8004476 ~ 8009523 (-) False G1704909
TU1952078 lncRNA upstream 3172 8006213 ~ 8009523 (-) True G1704909
TU1952129 lncRNA upstream 8215 8011256 ~ 8011649 (-) True G1704947
XM_036956756.1 mRNA downstream 20758 7901712 ~ 7924740 (-) False LOC110517214
XM_021595182.2 mRNA upstream 21933 8024974 ~ 8047015 (-) False pthlha
XM_036956763.1 mRNA upstream 21933 8024974 ~ 8047016 (-) False pthlha
XM_036958456.1 mRNA upstream 184293 8187334 ~ 8188387 (-) True LOC118942993
XM_036956771.1 mRNA upstream 803405 8806446 ~ 8808961 (-) False LOC118942856
XM_036956778.1 mRNA upstream 934102 8937143 ~ 8938405 (-) True LOC118942860
TU1951911 other downstream 177482 7657548 ~ 7768016 (-) True LOC118936572
TU1951902 other downstream 323657 7601802 ~ 7621841 (-) False LOC118936572
TU1951903 other downstream 344144 7588536 ~ 7601354 (-) False LOC118936572
TU1951803 other downstream 564039 7379889 ~ 7381459 (-) False LOC118942848
TU1951838 other downstream 579358 7365547 ~ 7366140 (-) True G1704726
TU1952160 other upstream 23248 8026289 ~ 8046882 (-) False pthlha
TU1952161 other upstream 23248 8026289 ~ 8045776 (-) True pthlha
TU1952844 other upstream 528694 8531735 ~ 8532803 (-) False G1705386
TU1952845 other upstream 528694 8531735 ~ 8532803 (-) False G1705386
TU1952846 other upstream 528694 8531735 ~ 8532803 (-) False G1705386

Expression Profile