RNA id: XM_036956762.1


Basic Information

Item Value
RNA id XM_036956762.1
length 696
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC118942853
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8003415 ~ 8009468 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGGAATTAAAGCGTTGGATCCCGCCCCTTTTTGTACTTCACATCCGGAGTCTCCGCCCTACTACTTCCTCTTTCCCAGTTCGCAGTCAGCGAGAGACACCATGAAGGCGTCTGGCACACTTCGGGAGTACAAAGTCGTTGGGCGCCTCCTGCCCTCGGTTAAgaaccccacccctcctctctaccGCATGAGGATCTTCGCTCCTAACCACGTGGTGGCCAAGTCTCGCTTCTGGTACTTTGTCTCCCAGCTGAGGAAGATGAAGAAGGCCAACGGAGAGACAGTCTACTGTGGTCTGGTGCACGAGAAGACTCCCCTGAAGGTGAAGAACTTTGGCATCTGGTTGCGTTACGACTCCCGTAGCGGAACCCACAACATGTACCGAGAATACAGAGACCTGACCACCTCTGCAGCAGTCACCCAGTGCTATCGTGATATGGGCGCTCGCCATCGTGCCCGTGCCCACTCCATCCACATCATGAAGGTCCAGGAGATCGCTGCCAATAAATGCCGCAGACCTGCCATCAAGCAGTTCCACGACTCCAAGATCAAGTTCCCCCTGCCCCACAGGGTCCTGCGTCGCCAACACAAGCCCCGCTTCACCACCAAGAGACCAAACACCTTCTTCTAAAGGAAATAAcctctgttttcactttgtgcgGCACAATAAAAATTCTAATTGTAGAAAAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951766 lncRNA upstream 14962 7988211 ~ 7988453 (+) True G1704683
TU1951756 lncRNA upstream 26698 7975766 ~ 7976717 (+) True G1704675
TU1951751 lncRNA upstream 31637 7971319 ~ 7971778 (+) True G1704671
TU1951705 lncRNA upstream 59841 7941952 ~ 7943574 (+) True yt6j
TU1951739 lncRNA upstream 74587 7928449 ~ 7928828 (+) True G1704659
TU1952127 lncRNA downstream 680 8010148 ~ 8010428 (+) True G1704945
TU1952128 lncRNA downstream 2156 8011624 ~ 8012083 (+) True G1704946
TU1952132 lncRNA downstream 8713 8018181 ~ 8018431 (+) True G1704950
TU1952143 lncRNA downstream 15555 8025023 ~ 8025554 (+) True G1704956
TU1952152 lncRNA downstream 52183 8061651 ~ 8062031 (+) True G1704965
XM_036956483.1 mRNA upstream 59831 7925016 ~ 7943584 (+) False yt6j
XM_036956485.1 mRNA upstream 59831 7925016 ~ 7943584 (+) False yt6j
NM_001160647.1 mRNA upstream 59832 7925049 ~ 7943583 (+) False yt6j
XM_036956730.1 mRNA upstream 120094 7882249 ~ 7883321 (+) True LOC118942851
XM_036956731.1 mRNA upstream 124825 7873615 ~ 7878590 (+) True LOC118936573
XM_036958455.1 mRNA downstream 119017 8128485 ~ 8132838 (+) True LOC118942992
XM_036956764.1 mRNA downstream 515488 8524956 ~ 8532810 (+) True LOC118942854
XM_036958457.1 mRNA downstream 544973 8554441 ~ 8561481 (+) False LOC118942994
XM_036956765.1 mRNA downstream 559922 8569390 ~ 8669398 (+) False LOC110512606
XM_036956766.1 mRNA downstream 598862 8608330 ~ 8669398 (+) True LOC110512606
TU1951729 other upstream 153295 7849560 ~ 7850120 (+) True G1704651
TU1951624 other upstream 345546 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 457571 7527934 ~ 7545844 (+) False LOC118942849
TU1951568 other upstream 458257 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 462765 7527934 ~ 7540650 (+) False LOC118942849
TU1952417 other downstream 529460 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 529460 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 534504 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 534504 8543972 ~ 8561212 (+) False LOC118942994
TU1952595 other downstream 840930 8850398 ~ 8851107 (+) True G1705229

Expression Profile