RNA id: XM_021595182.2


Basic Information

Item Value
RNA id XM_021595182.2
length 2288
RNA type mRNA
GC content 0.49
exon number 4
gene id pthlha
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8024974 ~ 8047016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagagagagagagagagagacatcctgCTGAAAACTTTCCCATCACTCTGACTCCAGCTGCAGCCTCAGCCGGCTCCACAGCCTCTATAACTAGAGCAGGACAGAACTACCACTGCAGACTGCAGAGCACAACTgtaggagaagaggacagaacTACTAGGAGCGGTAGAGAGGAACGGGCTCACGGAGAAATACAAATTCAGCAGGAAGCAGCAACACCTGGAGCACAACTCCAAACAACCCTCTCACTGGATCACTTTGAGCTTTGGCTTTTATTTCCAATTGAGACGATTTGGAAACAAAGAGTTGAGAAAACTAAGTTGGACTGTAAGAGGCGTGTTGGAGAtcaggagggaagagaaggacagTTTAGGACTTTGGATCTCAGTCATCTTGGGGTTTTTCCCCCGTCCTCTCTGTTTTAACAGACCATAAACCACCTGGATTGACCTTTAACCACTCTTGGgtttcttcattttttttttaccccctccAGCCTGGAACCTTGGAGAGAGTTCTCTCTCTTCTGGGGGGGTCGGAGGACGAGACTGACCAGACGTACAGCGGGACAACAGACTTCGTCCAAGATGTTGTGGTCGAGGAGAGTCGTACAGCTGTGGTGCTTCGCTGTGTTCTTACTGTGTTCCCCTGTTCCTCACTACGGACGGCCAATCCATGGGCTCGCCAACAGGATGAAGCGCTCGGTGACCCACGCCCAGCTGATGCACGATAAGGGCCGGACGCTGCAGGATTTCAAGCGTCGCATGTGGCTCCAAGAGCTGCTGGAGGAGGTCCATACGGCTGAGATCAGGGAGCTGCCCGCCCGCCCGGTGTTCAGCAgcggactggggctgggactacCGGGTGCCGGGGTAGGGGTCAGCCTGGGATTGGGCACCACTGGGGGTACCCTGCACCCCCACCCCAAACCTCCAGGGGGCACCAAAAACCTTCCCATTAACTTCcatatggaggaggagggaaccaACCTGCCGCAGGAGACCAACAAGTCCCAAACATACAAAGACAAAGACGGGGCGCGGAGGGCCAAGGAAGGGAAGAAAAAGAAAGGGAGGaatgggaagaggagggagggggagaggagggagggggagaggagggacgggggggagaagaggaagaggcggGCGCGCTCACTGGGCTGGGTGCAGGAAGGGGAGGAGCCTGGGAATGGGTACCACCTGGAGTGGCGAGGGCCCTTCTTCGGCCTGAGGGGGACGCTGCACTAGAACACTGTCACACTCTGACTAAGAAACCCTGAGGACATTCAGATGAACACCCAGACACTCCTGTTGCAGGGTTCTGTGATAGTGATTGTTCGGAAAGTAAAATAAGGAAATATTTATTTTCTGTAAATATTGTAAACGCACCAGACTAGTGATAATGACGAAGACAATAAAAATTACAGACGCTCGGCTCTGCGGAGCaacataatttaacaattgtgaAATCCTTCCTGTTCTGGTTTTGTTTTGTTAGGACTATGCCGATTATTATTCATGTCAGATTTTGCTGtaatttatttttgtttgaatcgtgtatttattttgtaaatgtatcgAGGTGCTGCTGACCTTCTATATTTTTGTACCATAATGCACTTTTagatttataaatatatatatatatatatatatatatatatatatatatatagacaagtAATTTTGTTAATTGACTTTTTGTGGTTGATTGAAATGAAGAAAACATTGTTGGTCATTCCTCCGTGTTATCTAGGCTCCTTCTCTGCACGGTTCTATAGTGATCACATGACTCGTCTGTCCGCTCTGACTGGCCCACAGACGTCTAATCTAGTTGGCTGTTGACCAGGGGCGTGTTCAATAGGCACACTAtggaaaatgtttaaaaatgttttacaaaatagGAAATCCAAGAAATTAGCATTTCTAATTGGACTAAAGTCCAGCTAGTCCCCTCCCCGTTCCAGATGGTTCTCTTCAGTTCGATACCTAACGAACACGACCCAGGACGACCCACGCAGCTGTCctcaacccctgacccctaacctctgTACATTGTGCTTCAACTCCCCCCTCCGTCAGTTGGTCCACTGGGAACCACCTTGTCTTTCTCCTGTTATGCTTCTGAATGCTGTCCTAAGTTCAAAGTTCACTCGGCCTGTACATAACCTGAACACAATGCAACAACTTCATATCGTTGTTTGGCACTTGCACTGAGAGACTACCCTATATTTAATGGATTAAACAGTATCTCCCCTGAGTGTGATGTGTCCTTGCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952131 lncRNA downstream 7366 8016618 ~ 8017608 (-) True G1704949
TU1952129 lncRNA downstream 13325 8011256 ~ 8011649 (-) True G1704947
TU1952079 lncRNA downstream 15451 8004476 ~ 8009523 (-) False G1704909
TU1952078 lncRNA downstream 15451 8006213 ~ 8009523 (-) True G1704909
TU1952085 lncRNA downstream 18242 8003455 ~ 8006732 (-) False G1704909
TU1952172 lncRNA upstream 20683 8067698 ~ 8067910 (-) True G1704980
TU1952173 lncRNA upstream 22739 8069754 ~ 8070386 (-) True G1704981
TU1952181 lncRNA upstream 40934 8087949 ~ 8088153 (-) True G1704987
TU1952183 lncRNA upstream 42234 8089249 ~ 8089949 (-) True G1704989
TU1952186 lncRNA upstream 43636 8090651 ~ 8090900 (-) True G1704992
XM_036956733.1 mRNA downstream 21933 7945498 ~ 8003041 (-) False LOC110515713
XM_036956734.1 mRNA downstream 21933 7945498 ~ 8003041 (-) False LOC110515713
XM_036956735.1 mRNA downstream 21933 7945498 ~ 8003041 (-) False LOC110515713
XM_036956736.1 mRNA downstream 21933 7945498 ~ 8003041 (-) False LOC110515713
XM_036956737.1 mRNA downstream 21933 7945498 ~ 8003041 (-) False LOC110515713
XM_036958456.1 mRNA upstream 140319 8187334 ~ 8188387 (-) True LOC118942993
XM_036956771.1 mRNA upstream 759431 8806446 ~ 8808961 (-) False LOC118942856
XM_036956778.1 mRNA upstream 890128 8937143 ~ 8938405 (-) True LOC118942860
XR_005038492.1 mRNA upstream 943716 8990731 ~ 8991221 (-) False LOC118942862
XR_005038491.1 mRNA upstream 943753 8990768 ~ 8991221 (-) False LOC118942862
TU1952076 other downstream 21980 7988701 ~ 8002994 (-) True LOC110515713
TU1952105 other downstream 62734 7941149 ~ 7962240 (-) True G1704927
TU1951911 other downstream 256958 7657548 ~ 7768016 (-) True LOC118936572
TU1951902 other downstream 403133 7601802 ~ 7621841 (-) False LOC118936572
TU1951903 other downstream 423620 7588536 ~ 7601354 (-) False LOC118936572
TU1952844 other upstream 484720 8531735 ~ 8532803 (-) False G1705386
TU1952845 other upstream 484720 8531735 ~ 8532803 (-) False G1705386
TU1952846 other upstream 484720 8531735 ~ 8532803 (-) False G1705386
TU1952847 other upstream 484720 8531735 ~ 8532803 (-) False G1705386
TU1952848 other upstream 484720 8531735 ~ 8532803 (-) False G1705386

Expression Profile