RNA id: TU1952159


Basic Information

Item Value
RNA id TU1952159
length 293
lncRNA type sense_over
GC content 0.49
exon number 2
gene id pthlha
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8024974 ~ 8047016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGGGCTGGGTGCAGGAAGGGGAGGAGCCTGGGAATGGGTACCACCTGGAGTGGCGAGGGCCCTTCTTCGGCCTGAGGGGGACGCTGCACTAGAACACTGTCACACTCTGACTAAGAAACCCTGAGGACATTCAGATGAACACCCAGACACTCCTGTTGCAGGGTTCTGTGATAGTGATTGTTCGGAAAGTAAAATAAGGAAATATTTATTTTCTGTAAATATTGTAAACGCACCAGACTAGTGATAATGACGAAGACAATAAAAATTACAGACGCTCGGCTCTGCGGAGCa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952156 lncRNA downstream 260 8024996 ~ 8025547 (-) False pthlha
TU1952131 lncRNA downstream 8199 8016618 ~ 8017608 (-) True G1704949
TU1952129 lncRNA downstream 14158 8011256 ~ 8011649 (-) True G1704947
TU1952079 lncRNA downstream 16284 8004476 ~ 8009523 (-) False G1704909
TU1952168 lncRNA upstream 9567 8035774 ~ 8036162 (-) True G1704976
TU1952172 lncRNA upstream 41491 8067698 ~ 8067910 (-) True G1704980
TU1952173 lncRNA upstream 43547 8069754 ~ 8070386 (-) True G1704981
TU1952181 lncRNA upstream 61742 8087949 ~ 8088153 (-) True G1704987
TU1952183 lncRNA upstream 63042 8089249 ~ 8089949 (-) True G1704989
XM_036956748.1 mRNA downstream 22766 7945498 ~ 8003041 (-) False LOC110515713
XM_036958456.1 mRNA upstream 161127 8187334 ~ 8188387 (-) True LOC118942993
XM_036956771.1 mRNA upstream 780239 8806446 ~ 8808961 (-) False LOC118942856
XM_036956778.1 mRNA upstream 910936 8937143 ~ 8938405 (-) True LOC118942860
XR_005038492.1 mRNA upstream 964524 8990731 ~ 8991221 (-) False LOC118942862
XR_005038491.1 mRNA upstream 964561 8990768 ~ 8991221 (-) False LOC118942862
TU1952076 other downstream 22813 7988701 ~ 8002994 (-) True LOC110515713
TU1952105 other downstream 63567 7941149 ~ 7962240 (-) True G1704927
TU1951911 other downstream 257791 7657548 ~ 7768016 (-) True LOC118936572
TU1951902 other downstream 403966 7601802 ~ 7621841 (-) False LOC118936572
TU1951903 other downstream 424453 7588536 ~ 7601354 (-) False LOC118936572
TU1952160 other upstream 82 8026289 ~ 8046882 (-) False pthlha
TU1952161 other upstream 82 8026289 ~ 8045776 (-) True pthlha
TU1952844 other upstream 505528 8531735 ~ 8532803 (-) False G1705386
TU1952845 other upstream 505528 8531735 ~ 8532803 (-) False G1705386
TU1952846 other upstream 505528 8531735 ~ 8532803 (-) False G1705386

Expression Profile