RNA id: TU1952160


Basic Information

Item Value
RNA id TU1952160
length 948
RNA type TUCP
GC content 0.54
exon number 3
gene id pthlha
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8024974 ~ 8047016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAACTgtaggagaagaggacagaacTACTAGGAGCGGTAGAGAGGAACGGGCTCACGGAGAAATACAAATTCAGCAGGAAGCAGCAACACCTGGAGCACAACTCCAAACAACCCTCTCACTGGATCACTTTGAGCTTTGGCTTTTATTTCCAATTGAGACGATTTGGAAACAAAGAGTTGAGAAAACTAAGTTGGACTGTAAGAGGCGTGTTGGAGAtcaggagggaagagaaggacagTTTAGGACTTTGGATCTCAGTCATCTTGGGGTTTTTCCCCCGTCCTCTCTGTTTTAACAGACCATAAACCACCTGGATTGACCTTTAACCACTCTTGGgtttcttcattttttttttaccccctccAGCCTGGAACCTTGGAGAGAGTTCTCTCTCTTCTGGGGGGGTCGGAGGACGAGACTGACCAGACGTACAGCGGGACAACAGACTTCGTCCAAGATGTTGTGGTCGAGGAGAGTCGTACAGCTGTGGTGCTTCGCTGTGTTCTTACTGTGTTCCCCTGTTCCTCACTACGGACGGCCAATCCATGGGCTCGCCAACAGGATGAAGCGCTCGGTGACCCACGCCCAGCTGATGCACGATAAGGGCCGGACGCTGCAGGATTTCAAGCGTCGCATGTGGCTCCAAGAGCTGCTGGAGGAGGTCCATACGGCTGAGATCAGGGAGCTGCCCGCCCGCCCGGTGTTCAGCAgcggactggggctgggactacCGGGTGCCGGGGTAGGGGTCAGCCTGGGATTGGGCACCACTGGGGGTACCCTGCACCCCCACCCCAAACCTCCAGGGGGCACCAAAAACCTTCCCATTAACTTCcatatggaggaggagggaaccaACCTGCCGCAGGAGACCAACAAGTCCCAAACATACAAAGACAAAGACGGGGCGCGGAGGGCCAAGGAAGGGAAGAAAAAGAAAGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952158 lncRNA downstream 82 8025647 ~ 8026207 (-) False pthlha
TU1952159 lncRNA downstream 82 8025807 ~ 8026207 (-) False pthlha
TU1952156 lncRNA downstream 742 8024996 ~ 8025547 (-) False pthlha
TU1952131 lncRNA downstream 8681 8016618 ~ 8017608 (-) True G1704949
TU1952129 lncRNA downstream 14640 8011256 ~ 8011649 (-) True G1704947
TU1952172 lncRNA upstream 20816 8067698 ~ 8067910 (-) True G1704980
TU1952173 lncRNA upstream 22872 8069754 ~ 8070386 (-) True G1704981
TU1952181 lncRNA upstream 41067 8087949 ~ 8088153 (-) True G1704987
TU1952183 lncRNA upstream 42367 8089249 ~ 8089949 (-) True G1704989
TU1952186 lncRNA upstream 43769 8090651 ~ 8090900 (-) True G1704992
XM_036956733.1 mRNA downstream 23248 7945498 ~ 8003041 (-) False LOC110515713
XM_036956734.1 mRNA downstream 23248 7945498 ~ 8003041 (-) False LOC110515713
XM_036956735.1 mRNA downstream 23248 7945498 ~ 8003041 (-) False LOC110515713
XM_036956736.1 mRNA downstream 23248 7945498 ~ 8003041 (-) False LOC110515713
XM_036956737.1 mRNA downstream 23248 7945498 ~ 8003041 (-) False LOC110515713
XM_036958456.1 mRNA upstream 140452 8187334 ~ 8188387 (-) True LOC118942993
XM_036956771.1 mRNA upstream 759564 8806446 ~ 8808961 (-) False LOC118942856
XM_036956778.1 mRNA upstream 890261 8937143 ~ 8938405 (-) True LOC118942860
XR_005038492.1 mRNA upstream 943849 8990731 ~ 8991221 (-) False LOC118942862
XR_005038491.1 mRNA upstream 943886 8990768 ~ 8991221 (-) False LOC118942862
TU1952076 other downstream 23295 7988701 ~ 8002994 (-) True LOC110515713
TU1952105 other downstream 64049 7941149 ~ 7962240 (-) True G1704927
TU1951911 other downstream 258273 7657548 ~ 7768016 (-) True LOC118936572
TU1951902 other downstream 404448 7601802 ~ 7621841 (-) False LOC118936572
TU1951903 other downstream 424935 7588536 ~ 7601354 (-) False LOC118936572
TU1952844 other upstream 484853 8531735 ~ 8532803 (-) False G1705386
TU1952845 other upstream 484853 8531735 ~ 8532803 (-) False G1705386
TU1952846 other upstream 484853 8531735 ~ 8532803 (-) False G1705386
TU1952847 other upstream 484853 8531735 ~ 8532803 (-) False G1705386
TU1952848 other upstream 484853 8531735 ~ 8532803 (-) False G1705386

Expression Profile