RNA id: XM_036958455.1


Basic Information

Item Value
RNA id XM_036958455.1
length 2739
RNA type mRNA
GC content 0.68
exon number 3
gene id LOC118942992
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8128485 ~ 8132838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATTGTCACAACGCGGCTCAGCTCACAACCGGACACCTGTACAGAACCGGACCCCTGTACAGAACTAGACCCCTGTACAGAACCGGACCCCTGTACAGAACTGGACCCCTGTACAGAACCAGACCCCTGTACAGAACTAGACCCCTGTACAGAACCGGACCCCTGTACAGAACTGGACCCCTGTACAGAACCGGACCCCTGTACAGAACCAGACCCCTGTACAGAACCAGACCCCTGTACAGAACTGGACCCCTGTACAGAACCGGACCCCTGTACAGAACTGGACCCCTGTACAGAACCGGACCCCTGTACAGATCCAGACCCCTGTACAGAACTAGACCCCTGTACAGAACCAGACCCCTGTACAGAACTAGACCCCTGTACAGAACCAGACCCCTGTACAGAACTGGACCCCTGTACAGAACTGGACCCCTGTACAGAACTAGATCCCTGTACAGAACTGGACCCCTGTACAGAACTAGACCCCTGTACAGAACTGGACCCCTGTACAGAACTGGACCCCTGTACAGAACTAGACCCCTGTACAGAACTGGACCCCTGTACAGAACTGGACCCCTCTACACCCTCTCCgagccaccacccccccccccagctataCCCTCTCCGAGCCACCACCCCCCCATCCCCCAGCTATACCCTCTCCGAGccaccaccccccctcccccagcttCACCCTCTACGAGccaccaccccccctcccccagctacACCCTCTCCGAGccaccaccccccctcccccagctacACCCTCTCCgagccaccacccccccccccccagctataCCCTCTCCGAGccaccaccccccctcccccagctacACCCTCTCCGAGCCACCACCCCCCCATCCCCCAGCTATACCCTCTCCGAGCCACCACCCCCCCTCCACCAGCTACACCCTCTCCGAGccaccacccccccctcccccagctacACCCTCTCCGAGccaccacccccccctcccccagctacACCCTCTCCgagccacccccccccctcccccagctacACCCTCTCCGAgccaccccacccctcccccagCTACACCCTCTCcgagccaccccccccccccctcccccagctacACCCTCTCCGAGccaccacccccctcccccagctACACCCTCTCCGAGccaccaccccccctcccccagctacACCCTCTCCgagccacccccccccctcccccagctacACCCTCTCCGAGccaccacccccccctcccccagctacACCCTCTCCGAGccaccaccccccctcccccagctacACCCTCTCCGAGccaccaccccccctcccccagctacACCCTCTCCGAGccaccaccccccctcccccagctacACCCTCTCCGagccaccccccccctcccccagctacACCCTCTCCgagccaccacccccccccctcccccagctacACCCTCTCCGAGccaccaccccccctcccccagctacACCCTCTCCGAGccaccaccccccccctcccgcaGCTACACCCTCTCTGAGccaccaccccccctcccccagctacACCCTCTCTGAGccaccacccccctcccccagctACACCCTCTCCGAGccaccacccccctcccccagctACACCCTCTCCGAGccaccacccccccctcccccagctacACCCTCTCCGAGccaccaccccccctcccccagctacACCCTCTCCGAGCCACCACCCCCTCCCCCAGCTACACCCTCTCCGagccacccccccctcccccagctacACCCTCTCCGAGccaccacccccctcccccagctATACCCTCTCCGagccaccccccccctcccccagctacACCCTCTCCGagccaccccccctcccccagctaTACCCTCTCCGagccaccccccccctcccccagctacACCCTCTCCGAACCACCGCTACACCCTCTCCGagccaccccccctcccccagctacACCCTCTCCGAGccaccaccccccctcccccagctacACCCTCTCCGAGCCACCACCCCCCATCCCCCAGCTACACCCTCTCCGAGCCACCACCCCCCATCCCCCAGCTACACCCTCTCCGAGccaccaccccccctcccccagctacACCCTCTCCGAGCCACCACCCCCCATCCCCCAGCTACACCCTCTCCGAGCCACCACCCCCCATCCCCCAGCTACACCCTCTCCGAGCCACCACCCCCCATCCCCCAGCTACACCCTCTCCGAGccaccaccccccctcccccagctacACCCTCTCTGAGccaccaccccccctcccccagctacACCCTCTCCGAGCCACCACCCCCCGTCCCCCAGCTACACCCTCTCCGAGccaccacccccccctcccccagctacACCCTCTCCGagccacccccccctcccccagctacACCCTCtccgagcccccccccccccagctacaCCCTCTCCGAGccaccacccccctcccccagctACACCTTCTCCGAGccaccacccccctcccccagctACACCCTCTCCGAGccaccaccccccctcccccagctacACCCTCTCCGAGCCACCACCCCCCATCCCCCAGCTACACCCTCTCCGAGCCACCACCCCCCATCCCCCAGCTACACCCTCTCCGAGccaccaccccccctcccccagctacACCCTCTCCGAGCCACCACCCCCCCATCCCCCAGCTACACCCTCTCCGAGCGAGTGTTTATCATGTTAGTGTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952191 lncRNA upstream 28209 8099845 ~ 8100276 (+) True G1704996
TU1952153 lncRNA upstream 59026 8069196 ~ 8069459 (+) True G1704966
TU1952152 lncRNA upstream 66454 8061651 ~ 8062031 (+) True G1704965
TU1952143 lncRNA upstream 102931 8025023 ~ 8025554 (+) True G1704956
TU1952132 lncRNA upstream 110054 8018181 ~ 8018431 (+) True G1704950
TU1952229 lncRNA downstream 13417 8146255 ~ 8146467 (+) True G1705020
TU1952232 lncRNA downstream 16613 8149451 ~ 8149669 (+) True G1705023
TU1952240 lncRNA downstream 30723 8163561 ~ 8164117 (+) True G1705031
TU1952243 lncRNA downstream 50067 8182905 ~ 8183281 (+) True G1705034
TU1952244 lncRNA downstream 52723 8185561 ~ 8185903 (+) True G1705035
XM_036956762.1 mRNA upstream 119017 8003415 ~ 8009468 (+) False LOC118942853
XM_036956761.1 mRNA upstream 120780 8003435 ~ 8007705 (+) True LOC118942853
XR_005038749.1 mRNA upstream 124060 8004291 ~ 8004425 (+) True LOC118943012
XM_036956483.1 mRNA upstream 184901 7925016 ~ 7943584 (+) False yt6j
XM_036956485.1 mRNA upstream 184901 7925016 ~ 7943584 (+) False yt6j
XM_036956764.1 mRNA downstream 392118 8524956 ~ 8532810 (+) True LOC118942854
XM_036958457.1 mRNA downstream 421603 8554441 ~ 8561481 (+) False LOC118942994
XM_036956765.1 mRNA downstream 436552 8569390 ~ 8669398 (+) False LOC110512606
XM_036956766.1 mRNA downstream 475492 8608330 ~ 8669398 (+) True LOC110512606
XM_036956767.1 mRNA downstream 552081 8684919 ~ 8744465 (+) False LOC118936349
TU1951729 other upstream 278365 7849560 ~ 7850120 (+) True G1704651
TU1951624 other upstream 470616 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 582641 7527934 ~ 7545844 (+) False LOC118942849
TU1951568 other upstream 583327 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 587835 7527934 ~ 7540650 (+) False LOC118942849
TU1952417 other downstream 406090 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 406090 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 411134 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 411134 8543972 ~ 8561212 (+) False LOC118942994
TU1952595 other downstream 717560 8850398 ~ 8851107 (+) True G1705229

Expression Profile