RNA id: TU1952440


Basic Information

Item Value
RNA id TU1952440
length 2231
RNA type TUCP
GC content 0.50
exon number 5
gene id LOC118942994
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8538928 ~ 8564807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGGAAACGTTATAGCTCCCGCTACAAACGTTACTGTAGGCCACAGACATATCCAGAGCTCATCCGAAGTCCCGTTTTATTGTTGACGTTTGTTGTGGATACAATTTTTCGTTTTTCCTCTTCTGAGAATGAAGATGGTTATTTCACATTGTCGAAGGTTTGCGCCGCAGTTTTAAAGGGACGGAGGCAAGgcgctctcttcctcctcctcggaCAGACGAGGAAGAGCCTGGAAACCGCTTGGGAATGTGAAACACACTCCGCGTCAGTGTTCTCAACGTGGCTCTCTGGATGATGTGACCTCTGGGACCTCGTTTCAATGGTGCACTTGTCTAGTGTGGATGTTAATGTTTCCTGAACCACCGAACTATAGCCGATAAGAGCATCGGTTACCGACAGTGTGCCAGTTATCATCCGTCTATTCTCATCTAGAGACAACTACTACTTGGTTGAAATGAATGGGCCACAATACAAACTGCGTATGTGTCTAATCAACAGAAAACGCTTGTAGGAATCTTAGCCTACTTCCCGACCACCAGTTATTAGGTTACTTTGACCAGCGCACAGACAAGGAGTGTCTGAATCTGCCCACCCCTGCCGTCGACCCTGAGGGCGTGGCGTGTGTTCAACCAACCAGAGCCCCGTGGACCTGTGACGTCACTGTGACATCATCATGTTCCCCTCCGTGACCCGTATCCTCCCCTCTAGGGTGTCATCACCGCTCCTCCTGGCCACCATGTTGATGCTGGTGGCCGCCAGCCCCGTCTCGGGATCGGACGCGGAGACGTGTTTCTCCCGACAGCATCAGAACGCCATAGTGAATGTCCGCCAGGCGCTGGTCCGACCGACCACCGTCATGGACTCCAGAGTCACCCAATCAGAGAGAGACTGTGTTCTGGCCTGCTGCTCAGAGGACGTCAAGCCAGGTATAAAGTGTACCCTGGCTGTGTTCAACCCTCACAAGCCCTCTGAGCCTCCCAACAACCACAACTGTCATCTGTTCCACTGCCAGAGTGAGCAGGACTGTCCCCTCCTGACTGCTGAACAGGGCATCAACACATACGACATCTTCAAAGGTTTGATTCATCCCACCACGGGGATACCTACTCCACCTTCCACAATCcaaccaactactactactgctactgctactactactactactactacaacacctACCATcagaccacaacccactactacTACATCGACCACCACTAAacctaccaccacaaccacaccacaacctactactaccaccactacacctaccaccacaccacaacccactactactactaccaccactacacctaccACAACTACAACCACACGACAacccactactaccaccactacacctaccaccacaaccacaccacaacccactactactactactaccaccactacacctaccaccgctacaaccacaccacaacctactactaccaccactacacctaccaccacaaccacaccacaacccactactaccaccactacacctaccaccacaaccacaccacaacccactactactaccaccactactacacaaCCTACTACCACAACGACACAGCTGACAACCACAACAAAACAACCCTCTTTAATGATAGTAACAATGCCTGTTATAACACGACCGACTccaaccactactacaacaacacaacaaacaaCATCCTGGTCACGACCAACTccaaccactactacaacaacacaacaaacaaCATCCTGGCCACGACCAACTccaaccactactacaacaacacaacaagcaACATCCTGGCCACGACCAACTccaaccactactacaacaacacaacaagcaACATCCTGGTCACGACCAACTccaaccactactacaacaacacaacaaacaaCATCCTGGCCACGACCAACTccaaccactactacaacaacacaacaaacaaCATCCTGCAACAATACTCCTACAACAATATCTACAATAACCACTATGAACAGAAAGCCCAATAAACCTCCCAAAAAAACTAACAAATTGTCTAAAAAACCCAAACCACAtcctgccactactactaccactacaacaacaacaacaacttctTTACCTGTCTCAACTACACCCCGCAGAGACCCAGACCCCATCAGAACTACTGAAAAACTCCAGCCAGCCACTGAGCcagctaccaccaccaccacttctaCTGGTGCTGCTGCCACCACTAAGAGCCCAGCAGCCATTGAGCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952385 lncRNA upstream 23743 8514577 ~ 8515185 (+) False G1705129
TU1952386 lncRNA upstream 23743 8514577 ~ 8515185 (+) True G1705129
TU1952381 lncRNA upstream 32499 8505246 ~ 8506429 (+) True G1705126
TU1952379 lncRNA upstream 33989 8504179 ~ 8504939 (+) True G1705125
TU1952374 lncRNA upstream 56794 8479641 ~ 8482134 (+) True G1705121
TU1952421 lncRNA downstream 362 8561574 ~ 8564689 (+) False LOC118942994
TU1952424 lncRNA downstream 362 8561574 ~ 8564689 (+) False LOC118942994
TU1952426 lncRNA downstream 362 8561574 ~ 8564689 (+) False LOC118942994
TU1952428 lncRNA downstream 362 8561574 ~ 8564689 (+) False LOC118942994
TU1952430 lncRNA downstream 362 8561574 ~ 8564689 (+) False LOC118942994
XM_036956764.1 mRNA upstream 6118 8524956 ~ 8532810 (+) True LOC118942854
XM_036958455.1 mRNA upstream 406090 8128485 ~ 8132838 (+) True LOC118942992
XM_036956762.1 mRNA upstream 529460 8003415 ~ 8009468 (+) False LOC118942853
XM_036956765.1 mRNA downstream 8178 8569390 ~ 8669398 (+) False LOC110512606
XM_036956766.1 mRNA downstream 47118 8608330 ~ 8669398 (+) True LOC110512606
XM_036956767.1 mRNA downstream 123707 8684919 ~ 8744465 (+) False LOC118936349
XM_036956768.1 mRNA downstream 123862 8685074 ~ 8744465 (+) False LOC118936349
XM_036956769.1 mRNA downstream 143938 8705150 ~ 8744465 (+) False LOC118936349
TU1951729 other upstream 688808 7849560 ~ 7850120 (+) True G1704651
TU1951624 other upstream 881059 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 993084 7527934 ~ 7545844 (+) False LOC118942849
TU1951568 other upstream 993770 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 998278 7527934 ~ 7540650 (+) False LOC118942849
TU1952595 other downstream 289186 8850398 ~ 8851107 (+) True G1705229
TU1952618 other downstream 347304 8908516 ~ 9035607 (+) False eps8a
TU1952614 other downstream 347497 8908709 ~ 9035607 (+) False eps8a
TU1952621 other downstream 347497 8908709 ~ 9035607 (+) False eps8a
TU1952622 other downstream 401163 8962375 ~ 9035607 (+) False eps8a

Expression Profile