RNA id: TU1952430


Basic Information

Item Value
RNA id TU1952430
length 2300
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id LOC118942994
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8538928 ~ 8564807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtccaggTTCACAAAGAGGGATAATAAACAAGACACACGGGGAAAGAAAGGCAATAATAATATGTTTCTCTTCAGTTTGCTCTGTTTTAATTCAATCGTTTCTTTAACCACATATTTATTAGATAAGAAACATGTTCAGTTTAATTTTAAGAGCATATCAATGTACTGTCATTCATTACAACACAATAACAATAGTGTCGTTGAACAGACCCCTCTTATAGTATTCTAAAACAGTAGAGAGATATCAGAGGGCTCTAGAACAGTAGAGGGATATCAGAGGgctctataacagtagagagatatCAGAGGGCTCTAGAACAGTAGAGGGATATCAGAGGgctctataacagtagagagatatCAGAGGGCTCTAGAACAGTAGAGAGATATCAGAGGGCTCTAGAACAGTAGAGAGATATCAGAGGGCTCTAGAACAGTAGAGAGATATCAGAGGGCTCTACAACAGTAGAGAGATATCAGAGGACTCTAGAACAGTAGAGGGATATCAGAGGACTCTACAACAGTAGAGAGACATCAGAGGGCTCTAGAACAGTAGAGAGATATCAGAGGGCTCTAGAACAGTAGAGAGATATCAGAGGGCTCTAGAACAGTAGAGAGATATCAGAGGGCTCTAGAACAGTAGCGGGATATCAGAGGGCTCTAGAACAGTAGAGAGACATCAGAGGGCTCTAGAACAGTAGAGAGATATCAGAGGGCTCTAGAACAGTAGCGGGATATCAGAGGGCTCTAGAACAGTAGAGAGATATCAGAGGGCTCTAGAACAGTAGAGAGACATCAGAGGGCTCTAGAACAGTAGAGAGATATCAGAGGGCTTTAGAACAGTAGAGAGATATCAGAGGGCTCTAGAACAGTAGAGAGATATCAGAGGGCTCTAGAACAGTAGAGGGATATCAGAGGGCTCTAGAACAGTAGAGAGATATCAGAGGGCTCTAGAACAGTAGAGAGATATCAGAGGGCTCTAGAACAGTAGAGAGATATCAGAGGGCTCTAGAACAGTAGAGAGATATCAGAGGGCTAAGGAATAAAGAACCTTAAGCAGCAATGTCTCTATTCCAACAACTCAGGAACCCTCTGAATTTAAAGGTTATagtgtaatttgggtgaactatccctttaagcaaACAGCAAACACAAAGTGATAGCCTCCCCTATGTACAAGAGAGTCATTGGAGGCTGGTcaagggaggacggctcataataatggctggaatggaatagatggaacggagtcaaatACTGGGAATAAACCAAGTCTAGATGTGTTTGATGCCTGTCtattcattccagccattactatgagtccCTCCTCAGATTCAAGGTGGCACCAGCCACCACTGATAAGTGTACTGACTGAGACCTTTAAAATAGGAGCAACTGACAGAGGCCTTTAAATAGGAACAACTGACTGAGACCTTTAAAGAGGAACAACTGACTGAGACCTTTAAAGAGAAACAACTGACAGACCTTTAAAGAGGAACAACTGACTGAGACCTTTAAAGAGGAGCAACTGACTGAGACCTTTAAAGAGGAGCAACTGACAGACCTTTTAAAGAGGAACAACTGACAGACCTTTTAAAGAGGAACAACTGACTGAGACCTTTTAAAGAGGAACAACTGCACAGTGTGTTAGGTACAATAAGACTTGCCTTTCCCTTCTGCATGTTTAACCATCTATAGCCATATGATGATGTCTGTGGACTGCTTGTTTCTAATCACCAACTCCAATTCTAAATGTCTGACTGACTTTAAACATGTGTTTTTCACCGTGCTGTGTGCTGTGGGTTAATTCCTTTGCTTCTGGCAGAGTTCTGGACGAACACAATGATGGATGCAAATCTTGTACAATCTGATGCACTATGGTATCCTATGTTTTTTGATATAACACACTTCTTTTTAAATGGTAGGATTGTTTTCATAGGTAGATGACACTGGTCGCACACTATTTTCATACGTCGATTTGTATTGTGTACTGTGCGAGTATCCACTTATACAGAAGGAATGTGTGAgattactgactgactgagtggaaTGGAGAAATGCCCACTGGTAGGTTAGATGTAATACTACGATGTACCACAGGGTGGCGCAGCATTAATGTAATACCACGATGTACCACAAGGCGGCGCAGCTATCTCAGAAACCACTACTGACTTCTTATTGGCATGCAGCGCAGTCACTTTAAACCACGTCACACCACTCGGGAGCATGGAGCCAAATTTAATATAATTTTGCACAAAATGATAACCTTGTTTATTACTGGTATTGCTTAGATAATTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952461 lncRNA upstream 4044 8555773 ~ 8557530 (+) False G1705146
TU1952460 lncRNA upstream 4044 8556531 ~ 8557530 (+) True G1705146
TU1952462 lncRNA upstream 5475 8555773 ~ 8556099 (+) False G1705146
TU1952456 lncRNA upstream 14445 8545714 ~ 8547129 (+) True G1705142
TU1952386 lncRNA upstream 46389 8514577 ~ 8515185 (+) True G1705129
TU1952333 lncRNA downstream 27940 8592629 ~ 8596863 (+) True G1705097
TU1952505 lncRNA downstream 51916 8616605 ~ 8616891 (+) True G1705171
TU1952512 lncRNA downstream 110876 8675565 ~ 8675864 (+) True G1705177
TU1952516 lncRNA downstream 122337 8687026 ~ 8687455 (+) True G1705181
TU1952520 lncRNA downstream 132165 8696854 ~ 8700184 (+) True G1705184
XM_036958457.1 mRNA upstream 93 8554441 ~ 8561481 (+) False LOC118942994
XM_036956764.1 mRNA upstream 28764 8524956 ~ 8532810 (+) True LOC118942854
XM_036958455.1 mRNA upstream 428736 8128485 ~ 8132838 (+) True LOC118942992
XM_036956761.1 mRNA upstream 553869 8003435 ~ 8007705 (+) True LOC118942853
XM_036956765.1 mRNA downstream 4701 8569390 ~ 8669398 (+) False LOC110512606
XM_036956766.1 mRNA downstream 43641 8608330 ~ 8669398 (+) True LOC110512606
XM_036956767.1 mRNA downstream 120230 8684919 ~ 8744465 (+) False LOC118936349
XM_036956768.1 mRNA downstream 120385 8685074 ~ 8744465 (+) False LOC118936349
XM_036956769.1 mRNA downstream 140461 8705150 ~ 8744465 (+) False LOC118936349
TU1952417 other upstream 362 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other upstream 362 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other upstream 362 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other upstream 362 8543972 ~ 8561212 (+) False LOC118942994
TU1951729 other upstream 711454 7849560 ~ 7850120 (+) True G1704651
TU1952595 other downstream 285709 8850398 ~ 8851107 (+) True G1705229
TU1952618 other downstream 343827 8908516 ~ 9035607 (+) False eps8a
TU1952614 other downstream 344020 8908709 ~ 9035607 (+) False eps8a
TU1952621 other downstream 344020 8908709 ~ 9035607 (+) False eps8a
TU1952622 other downstream 397686 8962375 ~ 9035607 (+) False eps8a

Expression Profile