RNA id: XM_036956766.1


Basic Information

Item Value
RNA id XM_036956766.1
length 6040
RNA type mRNA
GC content 0.54
exon number 18
gene id LOC110512606
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8569390 ~ 8669398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTTAACTGCTGTCTCTATACTAACCCTGAACCAGGGCTCTTAATGGATCCTGTCGCTGGGTAACTGCTGTCTCTATACTAACCCTGAACCATCGTACTGGATCCTGTCGCTGGATACATGTACTGGACAGACTGGGGCGAGGTTCCTAAGATTGAGCGTGCCGACCTGGACGGGACGGAGAGGCTAGTGATGGTCAACACCTCCCTGGGCTGGCCCAATGGTCTGGCGCTGGACTACACAGACCGGATGATCTACTGGGGCGACGCCAAGACGGACAAGATAGAGgtgaTGTGTATGGACGGTTCAGGCAGGAGGATCCTGGTAGAAGATAAGCTACCTCACATCTTTGGCTTCACTCTGCTGGGGGACTATGTGTActggacagactggcagagacgcAGCATTGAGAGGGTTCACAAACACACCACGGAGAGAGAGTTCATCATAGACCAGCTACCAGACCTGATGGGGCTCAAAGCTACATATGTACACCAGACCTTCGGTACCAACCTGTGTGCGGAGGCTAATGGTGGGTGTAGCCACCTATGCCTGTATAAGCCGGTGGGCGTCCAGTGTGCCTGTCCCATTGGTCTAGAGCTGATAGCTGACCTGTCCACCTGCATCGTACCAgaagccttcctcctcttctcccgaCACACAGACATCAGACGCATCTCCTTGgaaaccaacaacaacaacgtgGCCATCCCGCTGACCGGGGTTAAAGAGGCGTCTGCACTGGACTTCGACATCACCGACAACCGTATCTACTGGACAGATATCACATTGAAGacaATCAGTCGTGCGTTTATGAACGGCAGCGCTCTAGAACATGTGGTGGAGTTTGGCCTGGACTACCCAGAAGGCATGGCGGTGGACTGGTTGGGGAAGAATCTGTACTGGGCCGACACGGGGACCAATCGTATCGAGGTGGCCAAGCTGGATGGACAGCACAGACAGGTCCTAGTCTGGAAGGATCTGGACAGCCCTCGAGCCCTGGCACTGGACCCTGCTGAGGGGTTTATGTACTGGACAGAGTGGGGTGGGAAGCCCAAGATTGACCGCTCAGCGATGGACGGGACGGGTCGGATCACTCTGGTGCCCAATGTGGGCCGAGCCAACGGGCTGACCATCGACTATGCCGAGAGGCGACTGTACTGGACTGACCTGGACACGACACTCATAGAGTCCTCCAACATGCTGGGTCTGGAGCGTGAGGTTATAGCCGACGACCTCCCCCACCCCTTCGGTCTGACCCAGTACCAGGACTACATCTATTGGACGGACTGGTCTCAGCGCAGCATCGAACGGGCCAATAAGACATCGGGCCAGAACCGTACGGTCATCCAGGGTCACCTGGACTACGTGATGGACATCTTGGTCTTCCACTCGTCACGCCAGGGGGGCTGGAACGCCTGCGCCTCCACCAATGGGCAATGCTCACACCTCTGTCTGGCTGTACCAATCAGCAGCTTCGTCTGCGGATGCCCCGCCCACTTCTCCCTCAACAATGACAACAAGACCTGCAGTGccccTACGTCGTTCCTCTTGTTCAGTCAGAAGTCAGCCATTAACCGGATGGTGATGGATGAGCATCAGTCTCCTGACATCATCCTTCCCATCCACAGTCTGAGGAATGTCAGGGCTATAGACTACGACCCCCTGGATAAACAGCTGTACTGGATCGACTCCAAACAGAACGCAATCCGCAGAGCGCAGGAGAACGGGAACATGAGTATGACGGTGGTGTGGAGCCAAGTGGGTGGTCCTAACCTGGGCCTCCAGCCGTTTGACCTGAGCATCGACATCTACAGCCGCTTCATCTACTGGACCAGCGAGGTCACTAATGTCATTAACGTGACGAGGACAGACGGCAGCCGGGTGGGAGTGGTGCTGAGAGGAGAACACGACAGACCCAGAGCCATCGTGGTCAACCCAGAGCGAGGgtacATGTACTTTACCAACCTGCAGGAGCGCAGTCCTAAGATAGAACGAGCAGCGCTcgacgggacagagagagaggtgttgttcTTCAGTGGCCTGGGGAAGCCCGTTGCCCTGGCCATAGACAATGAGGTCGGCAAGCTGTTCTGGGTCGACTCAGACCTCCGACGCATCGAGAGCAGTGACCTATCAGgAGCCAATCGGATTGTGATTGAGGACTCCAACATCCTCCAGCCGGTTGGTCTGACGGTGTTTGGTAACCACCTGTACTGGATCGACCGTCAGCAGCAGATGATCGAACGCATCGACAAGACGACCAGGGAGGGAAGGACCAAGATCCAGGCTCGCATTGCCTCTCTCAGCGACATTCACGCTGTCTACGACCTCGACATGAGCGAGTACAGTAAGCACCCTTGTACCTGGGACAACGGAGGCTGTTCTCACATCTGTATCGTCAAGGGAGACGGAACCACACGCTGCTCCTGTCCTGTTCATCTGGTCCTTCTGCAGAATGAACTCTCCTGTGGAGaACCCCCCACCTGTTCTCCAGAACAGTTCTCCTGTGTGTCCGGGGAGGTGGACTGTATTCCCCACGCGTGGCGGTGTGACGGCTACCCAGAGTGTGATGACAGCAGCGACGAGGGAGACTGTCCTGTCTGTTCAGATTCAGAGTTTCAGTGTGACTCCAGACAGTGTGTTGACCTCAGCCTCCGCTGCAACGGAGAGGTCAACTGTCAGGATCGCTCAGACGAGAACAAATGTGAAGTGCGTTGCTCTCCGGACCACTTCAGCTGTTCTAGCGGTCAGTGTGTGGGGAAACATCAGAAGTGTGACCACTCTACAGACTGCTCTGACAACTCGGACGAGATGGGCTGCTaCCCGACTGAAGAGCCGTCCTCCCAGCCCACCAACACCATCGGCTCCATTGTGGGGGTTGTCATGGCGCTGTTTGTGGTGGGCGCCATCTACTTGGTGTGCCAGCGCGTGCTCTGTCCCCAGATGAAGGATGACAGGGAGACGGTGACCAATGACTTGGTGGTCCACGGCCCTTCTGTTTCTCTGGGTTATGTACCTCACCCTGCCTCTCTGTCCGGGTCTCTGCCAGGTATGTCCAGGGGGAAGTCTGTGATTGGTTCGTTGAGCATCATGGGCGGGTCCAGTGGCCCCCCTTACGACCGCGCCCACGTAACTGGAGCCTCCTCCTCAAGCTCCTCCTCCACCAAGGGCACGTACTTCCCCCcgaTCCTgaaccctcctccatctcctgcGACCGTCAGGTCTCAGTACACCATGGAGTTTGGCTACTCCTCCAACAGCCCGTCAACGCACCGTTCATACAGTTACCGTCCCTACACCTACAGTCACTTCGCCCCTCCCACAACCCCCTGCTCCACGGACGTCTGCGACAGCGACTACACCCCCGGACGCCGCGCCCCGCCCACCTCCAACTCCGGCGTCGCCAAAGGTTACACCAGCGACCTGAACTACGACTCGGAACccttccccccaccccccaccccccgcaGCCAGTACCTGTCAGCGGAGGAGAACTGTGAGagctgccccccctccccctataCGGAGCGCTCCTACTCTCACCACCTCTACCCCCCGCCCCCATCACCCTGCACAGACTCCTCCTGAAACCCCTCGCTGTACATAACAACTGTTGATATTGTGTTTCtaaaaagagggggaggagaggaggctgctgagggatgTACAGAACATATGAACAGAGAAACAGGAAGCTCGGGGTGGAAGAAAGAGCTCCGGGAACATTTGTACATTTTAAAAATAGAAAAAAGCATATCTATATATTTTCTATACAGCGTTTACTGGATACGCCGTAGAGGTTTGTATTCAAAcatttgtacatttattttttattttttaatgaaaACGTTTTATTAAAACCATCACAAACATGATAAGTTGCCTTAAATCCAGAAGATACAAACAGTTGTCTGTTTTTACGAAGGCTGGAAGAACGTTTAAAACACGTAGATGGAACTATCTGACGCCAAATAACACACCGTGACAACGCCCGGAACAATGGATGGAGGGAGTGGTGAGGCAGGATGACGCCCCCTGGAGGTGACAGACAGCTACTGCACCACGGCACTCTGCAGCCTGGGCAGCCATTTTGTAGTGGATCAGTGATCCCCATAGTAACCAGTCAGCTGGTTTCCATAGTAACAGAAATTTTGATTTGAGCTCCTTTCTAATGGTTTCCTGGTTTCCCAGGACTTCCTGTCCGCTTGTATTGCTTCAACTAGGTACTACATATTATACAAGCTCCTTATTCATCTAACAGGGTACATAAAGAACCTCTGACCCGACCCAGGGCCCCTCGTCACTACCACAACACTCCTGACCCGACCCGGGGCCCCTCGTCACTACCACAACACTCCTGACCCGACCCAGGGCCCCTCGTCACTACCACAACACTCCTGACCCGACCCATAGGTCCAGGAAGGGGTGGGGTACAGAGGTGGAGGTCAGGGTTCACAGAAGGTCAGAAGGTCTGTTGTGTGATGGGGAAACAGATTCTCACATCTGATGAGGTTTTTACTGCACAATATTCAACCAAAATCTATGTTCTGTCATTTGAGGTTATTTGATATTTTTCtgtatgtttttgttttaaatgCCAGACTGCAACTGAAGATTATCTTTACCCAGAACACATCTGGTACTGAGGGGGGTTTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGGTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGGTTTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGGTTTTATCTATCCTGTCTGGTTAAGAGACCCAGAACACATCTGTTACTGAGGGGGTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGGTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGGTTTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGGTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGGTTTTATCTATCCTATCTGGATGGGACAGACCCAGAACACATCTGTTACTGAGGGGGGTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGGGTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGtactgaggggggggggttaTCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGGTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGTTACTGAGGGGGGGGTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGGTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGTTATCTATCCTGTCTGGATGGGACAGAACCAGAACACATCTGGTACTGAGGGGGTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGTTATCTATCCTGTCTGGATGGGACAGAACCAGAACACATCTGGTACTGAGGGGGTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGGTTTTATCTATCCTGTCTGGATGGGACAGACCCAGAACACATCTGGTACTGAGGGGGTTATC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952333 lncRNA upstream 11467 8592629 ~ 8596863 (+) True G1705097
TU1952438 lncRNA upstream 43523 8561574 ~ 8564807 (+) False LOC118942994
TU1952439 lncRNA upstream 43523 8561574 ~ 8564807 (+) False LOC118942994
TU1952443 lncRNA upstream 43523 8561574 ~ 8564807 (+) False LOC118942994
TU1952430 lncRNA upstream 43641 8561574 ~ 8564689 (+) False LOC118942994
TU1952512 lncRNA downstream 6167 8675565 ~ 8675864 (+) True G1705177
TU1952516 lncRNA downstream 17628 8687026 ~ 8687455 (+) True G1705181
TU1952520 lncRNA downstream 27456 8696854 ~ 8700184 (+) True G1705184
TU1952524 lncRNA downstream 31924 8701322 ~ 8704358 (+) True G1705185
TU1952528 lncRNA downstream 36938 8706336 ~ 8706812 (+) True G1705188
XM_036958457.1 mRNA upstream 46849 8554441 ~ 8561481 (+) False LOC118942994
XM_036956764.1 mRNA upstream 75520 8524956 ~ 8532810 (+) True LOC118942854
XM_036958455.1 mRNA upstream 475492 8128485 ~ 8132838 (+) True LOC118942992
XM_036956761.1 mRNA upstream 600625 8003435 ~ 8007705 (+) True LOC118942853
XM_036956767.1 mRNA downstream 15521 8684919 ~ 8744465 (+) False LOC118936349
XM_036956768.1 mRNA downstream 15676 8685074 ~ 8744465 (+) False LOC118936349
XM_036956769.1 mRNA downstream 35752 8705150 ~ 8744465 (+) False LOC118936349
XM_036956770.1 mRNA downstream 101489 8770887 ~ 8791070 (+) True LOC118942855
XM_036956772.1 mRNA downstream 150211 8819609 ~ 8898371 (+) True LOC118942857
TU1952417 other upstream 47118 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other upstream 47118 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other upstream 47118 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other upstream 47118 8543972 ~ 8561212 (+) False LOC118942994
TU1951729 other upstream 758210 7849560 ~ 7850120 (+) True G1704651
TU1952595 other downstream 181000 8850398 ~ 8851107 (+) True G1705229
TU1952618 other downstream 239118 8908516 ~ 9035607 (+) False eps8a
TU1952614 other downstream 239311 8908709 ~ 9035607 (+) False eps8a
TU1952621 other downstream 239311 8908709 ~ 9035607 (+) False eps8a
TU1952622 other downstream 292977 8962375 ~ 9035607 (+) False eps8a

Expression Profile