RNA id: XM_036956768.1


Basic Information

Item Value
RNA id XM_036956768.1
length 6050
RNA type mRNA
GC content 0.51
exon number 20
gene id LOC118936349
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8684919 ~ 8744666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TtacctgacaaaatgtaaaaatataaagTTATATTGTATGACTACAACGTGTTTTAACTGCACACGGTGTCGTCCTTCCCCGGTGTCGACCTTCCCAGTTGTACTTGTGTAATGTCGGTGTATATCGTTTTGTGGAGGTGAACCTGAAGCCATCATCATGCAGAGCACAGCCAACTACCTGTGGCTCATCTCAGACCTGCTGGGCCAGGGAGCTACAGCTAACGTCTACCGTGgcagacacaagAAAACGGGGGACCTATATGCGGTGAAGGTGTTCAACAACCTCAGTTTCCTGCGACCACTCGACGTCCAAATGAGAGAGTTTGAGGTCCTGAAGAAACTCAACCATAAGAACATCGTCAAGCTGTTCGCTGTGGAGGAGGAGTCCAACACCCGTCACAAGGTGTTGGTGATGGAGTATTGTCCCTGTGGGAGTCTGTATACGGTGCTGGAGGAGTCTTCAAACGCCTACGGACTCCCCGAGGATGAGTTCCTCATCGTGCTACAGGACGTGGTAGCCGGTATGAACCATCTCAGAGAGTACGGCATCGTGCACCGTGACATCAAACCAGGCAACATCATGCGTGTCATCGGCGAGGACGGGAGGTCCGTCTATAAACTGACTGATTTCGGAGCAGCCAGAGAACTAGATGACGATGAGCAGTTTGTCTCTCTTTACGGCACTGAGGAATATCTGCACCCTGACATGTATGAGCGTGCAGTGCTGAGGAAAGAGCACCAGAAGAAGTATGGAGCGACGGTTGACCTGTGGAGCATCGGAGTCACCTTCTTCCACGCTGCCACCGGGTCACTCCCCTTCAGACCCTTCGAAGGACCACGCAGGAACAAGGAAGTCATGTATAAAATCATCACAGAGAAGCCATCAGGAACCGTCTCTGGGCAGCAGAAGTTTGAGAACGGGAAGATTGAGTGGAGCACAGAGATGCCTGTCTCCTGCAACCTGTCCAAgggcCTCCAGAGCTTGCTGACCCCAGTCCTAGCTAACATCTTGGAGGCTGACCAGGAGAAATGTTGGGGCTTTGACCAGTTCTTTGCTGAGACCAGTGATATCCTGCATCGTACCGTGGTGTTGGTCTTCAGTCTACAGCAGGCTACTCTCCACTACATCTacatccaccagtacaatacGGCGACTCTCTTCCAGGAGCTGTTGTCTCGTCGGTGCAGTATCCCGGTCCACAACCAGGAGCTCCTGTACGAGGGGCGACGCCTACAGCTTGAGCCCAACCGCCAAGCCCAGACCTTCCCGCGGACCTCCAGAGACAACCCCATCATGCTGCTCAGCAGAGAGTCCGTAGCTACAGTGGGGCTCATCTTCGAGGACCCGAGTCCTCCTAAAGTCCAGCCTCGCTACGATCTGGACCTGGATGCCAGCTATGCCAAGACGTTTGCAGGAGACGTGGGCCACCTGTGGAAGACCTCAGACTCCCTGTTGGTTTGTCAGGAGCTGGTCAGGAAGGGAGTCAGGGGACTGATtgagTTGATGAAGGAGGACTACAGCGAGATGGTACATAAGAAGTCAGAGGTCATCCACGTCTGTCACTACTGCTCTCAGATCCTGGAGAGGACAGAGCAGCTgtacGAGGTGTTAATGCAGGCCAATATGTTGTCGTCGTCAGAATACGATGAGATCTCAGACATGAGGAAGAAAATAGTCCTTATCTCTAACTCCTTAGTCCCCATGGAACAGACGGTTCAGGACATCAAGAGTAAGTTCCTGTCAGGTGGTGTTCTGACGGACAGCTGGACTCAAGCTGGAACACACCCTGAAGACAGGAAtgttgAGAGGATCAAGGTTCTCCTGGACTCCATTACAGCCATCTACCACCAGTTTAAGAAGGACAAGGCTGAGAGACGTCTGCCGTACAACGAGGAACAAATACACAAATTTGACAAACAGAAGCTGGTGTTCCATGCCACCAAGGCCAGGTCTCTGTTTACAGAGGAGTGTGCCATGAAGTACCGCCTCTTCATCTCTAAGAGCGAGGAGTGGATGAGGAAGGTGCATCACGTGaggaagcagctgattggtcTAACCAGCCAATTCAACAGCGTGGAGAAAGAAGTTTCCATGGTGATGGAGAGAGTTATTAagCTACAGGAGCAGTTACCTGGTAAGGTGCTACCTCTGGCATCCAGTGGTATGGTGAAGCCTCAAGCCTACCTCAGCCAGAGCACCTTGGTAGAGATgaccctgggGATGAAGAAGCtgaaggaagagatggagggggtagTAAAGGAGTTGGCGGAGAACAACCACTTCCTGGAGAGGTTTGGCTCTTTGACATTGGATGGAGGAATGAGAAGTGTGGACCGTATCTGAGACCATGTGGCCCCTCGCTACACCCTACACCTTCACCCAACCTCCATACTCACCCTACACCTTCACCCAACCTCCATACCCACCCTACACCTTCACCCAACCTCCATACCCACCCTACACCTTCACCCAACCTCCATACCCACCCTACACCTTCACCCAAATTCCATACCCACCCTACACCTTCACCCAACCTCCCTACCCACCCTACACCTTCACCCAACCTCCATACCCACCCTACACCTTCACCCAACCTCCATACCCACCCTACACCTTCACCCAACCTCCATACCCACCCTACACCTTCACCCAAATTCCATACCCACCCTACACCTTCACCCAACCTCCATACCCACCCTAAACCCTCCCCCCTGACTCTCAACCCACCCTAAACCCTCACTCGTCAACTCTCACCCACCCTAAACCCTCACTCGTCGACTCTCACCCACCCTAAACCCTCACTCGTCGACTCTCACCCACCCTAAACCCTCACCCCTCGACTCACCCACCCTAAATCCCCACCTCAATCCACtttctagaccaggggtctccaaccttttcaAGCATGAGAGCTACCTTCAAATAGACCCGTTGTTCTCCTCTCCCTGCAACTCTTCCCcgggtccttagtgtacaagagaCACTATGTTTTCCCcgggtccttagtgtacaagagaCACTATGTTTTCCCtgggtccttagtgtacaagagaCACTATGTTTTCCCtgggtccttagtgtacaagagaCACTATGTTTTCTGTCGATATACCTGGTAAAACAATGGTTAATAAACATTAAAgggggccctataaaatctgatGTATTTTTTTCTCCCAGATCCttctgttttctgttttcctATATTCTGTTTTCTCAGTTGATGTATTTAGTTTTTACTCTCAAAACGGCATGTTCTGAGTCCGTGTCAATGTTTAAATCACATCAGAAGAAACTATTTTTAGGTTTGGAAGAAAACGAACACGTTTAGATTTTTGGAGTGCAATTCCCTTTTAATTGTGCAGGAATGTGCCGTTTTAATGTGCCGGTCTGTGGTGGTTcagtactgctgctgctgattTCATGGCATAGTTTACCAACAAACAAACGGTAGATACAAATGATGTACTTCTTCTAGATAAGCCTACTTTACAGTTAACATTTAATATGGTTTTGGGGGAAAGTATTTCTGTCAATCTACAAGACAGTTAATCACATCAACTGGCGTTACACTGAATGACAGACAAACACCGGACGGACGGACGCCATATTGCTGAAAATGAATTGGCAGATAATGTGTTAGGTTTGGCTTTTTAATccaatagtggctaaccaggggtgggataatgtcGATGTTGCCTTGATTAGATAGTAGCTGGGAGCTTGCCGTGTCTCTGATACTTAgctaaccaggggtgggataatgtcGATGTTGCCTTGATTAGATAGTATCTGGGAGCTTGCCGTGTCTCTGATACTtggctaaccaggggtgggataatgtcGATGTTGCCTTGATTAGATAGTATCTGGGAGCTTGCCGTGTCTCTGATACTtggctaaccaggggtgggataatgtcaatgttgCCTTGATTAGATAGTAGCTGGGAGCTTGCCGTGTCTCTGATACTTAgctaaccaggggtgggataatgtcGATGTTGCCTTGATTAGATAGTATCTGGGAGCTTGCCGTGTCTCTGATACTTAgctaaccaggggtgggataatgtcGATGTTGCCTTGATTAGATAGTATCTGGGAGCTTGCCGTGTCTCTGATACTtggctaaccaggggtgggataatgtcaatgttgCCTTGATTAGATAGTAGCTGGGAGCTTGCCGTGTCTCTGATACTTAgctaaccaggggtgggataatgtcGATGTTGCCTTGATTAGATAGTATCTGGGAGCTTGCCGTGTCTCTGATACTtggctaaccaggggtgggataatgtcaatgttgCCTTGATTAGATAGTAGCTGGGAGCTTGCCGTGTCTCTGATACTTGGCTAACCAGGGAtgggataatgtcaatgttgCCTTGATTAGATAGTAGCTGGGAGCTTGCCGTGTCTCTGATACTtggctaaccaggggtgggataatgtcaatgttgCCTTGATTAGATAGTAGCTGGGAGCTTGCCGTGTCTCTGATACTtggctaaccaggggtgggataatgtcGATGTTGCCTTGATTAGATAGTATCTGGGAGCTTGCCGTGTCTCTGATACTtggctaaccaggggtgggataatgtcGATGTTGCCTTGATTAGATAGTATCTGGGAGCTTGCCGTGTCTCTGATACTTGGCTAACCAGGGGTGGCATAATGTCGATGTTGCCTTGATTAGATAGTAGCTGGGAGCTTGCGGTGTCTCTGATACTTTCAGAATATTTTGCGAGCTACAAATAGCTACTGGTAGCTGGTGATCGAcctgttggagagccctgatctaGACCCTGACCCCTACCTGACCCCCACCTCAATCCACTATCTAAACCCTGACCCCCACCTCAATCCACTATCTAGACCCTGACCCCTACCTGACCTCCACCTCAATCCACTATCTAGACCCTGACCCCTACCTGACCCCCACCTCAATCCACTATCTAGACCCTGACCCCCCCACCTCAATCCACTATCTAGACCCTGACCCCCACCTCAATCCACTATCTAAACCCTGACCCCCACCTCAATCCACTATCTAGACCCTGACCCCCACCTCAATCCACTATCTAGACCCTGACCCCCACCTCAATCCGCTATCTCGACCCTGACCCCCCACCTCAATCCGCTATCTCGACCCTGACCCCCCCACCTCAATCCTCTATCTCGACCCTGACCCCCCACCTCAATCCACTATCTAGACCCTGACCCCCACCTCAATCCACTATCTAGACCCTGACCCCTACCTGACCCCCACCTCAATCCACTATCTAGACCCTGACCCCTACCTGACCCCCACCTCAATCCACTATCTAGACCCTGACCCCCACCTCAATCCACTATCTAGACCCTGACCCCTACCTGACCCCCACCTCAATCCACTATGTAGACCCTGATCCCCCACCTCAATCCGCTATCTCGACCCTGACGCCTACCTGACCCCACCAGTCTACAGTCTAGACCCCTGACCCCACCAGTCTACAGTCTAGACCCCTGACCCCACCAGTCTACAGTCTAGACACCTGACCCCTACCTGACCCCACCAGTCTACAGTCTAGACACCTGACCCCACCAGTCTACAGTCTAGACCCCTGACCCCACCAGTCTACAGTCTAGACCCCTGACCCCTACCTGACCCCACACATCTACAGTCtagacccctgacccctaactgACCCCACCAGTCTACAGTCTAGACCCCTGACCCCTACCTGACCCCACCAGTCTACAGACTAGACCCTTGACCCCTACCTGACCCCACCCGTCTACAGTCTAGACGCCTGACCCCTAACTGACCCCACCAGTCTACAGTCTAGACCGCTGACCCCTACCTGACCCCACCAGTCTACAGTCTAGACCCCTGACCCCTACCTTACCCCACCAGTCTAGACGCTGCAGAGAAAGGAGAATGTTCCCTCATCTGGCCAGTGGTATATAATTCCTGTGTATATACATGTGTGTTTCATGCTGTAAATAGTCTGAGTCTGTAATGTGTATTATTATAAATGAGTTATCTCTCTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952512 lncRNA upstream 9210 8675565 ~ 8675864 (+) True G1705177
TU1952505 lncRNA upstream 68183 8616605 ~ 8616891 (+) True G1705171
TU1952333 lncRNA upstream 88211 8592629 ~ 8596863 (+) True G1705097
TU1952452 lncRNA upstream 120385 8561574 ~ 8564689 (+) False LOC118942994
TU1952543 lncRNA downstream 10685 8755150 ~ 8755628 (+) True G1705203
TU1952547 lncRNA downstream 16010 8760475 ~ 8761508 (+) False G1705207
TU1952548 lncRNA downstream 16010 8760475 ~ 8761839 (+) True G1705207
TU1952553 lncRNA downstream 35752 8780217 ~ 8781445 (+) True G1705211
TU1952580 lncRNA downstream 52463 8796928 ~ 8797276 (+) True G1705217
XM_036956765.1 mRNA upstream 15676 8569390 ~ 8669398 (+) False LOC110512606
XM_036956766.1 mRNA upstream 15676 8608330 ~ 8669398 (+) True LOC110512606
XM_036958457.1 mRNA upstream 123593 8554441 ~ 8561481 (+) False LOC118942994
XM_036956764.1 mRNA upstream 152264 8524956 ~ 8532810 (+) True LOC118942854
XM_036958455.1 mRNA upstream 552236 8128485 ~ 8132838 (+) True LOC118942992
XM_036956770.1 mRNA downstream 26422 8770887 ~ 8791070 (+) True LOC118942855
XM_036956772.1 mRNA downstream 75144 8819609 ~ 8898371 (+) True LOC118942857
XM_036956774.1 mRNA downstream 119866 8864331 ~ 8869236 (+) True LOC118942858
XM_036956775.1 mRNA downstream 163821 8908286 ~ 9091490 (+) False eps8a
XR_005038493.1 mRNA downstream 279909 9024374 ~ 9027016 (+) True LOC118942863
TU1952417 other upstream 123862 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other upstream 123862 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other upstream 123862 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other upstream 123862 8543972 ~ 8561212 (+) False LOC118942994
TU1951729 other upstream 834954 7849560 ~ 7850120 (+) True G1704651
TU1952595 other downstream 105933 8850398 ~ 8851107 (+) True G1705229
TU1952618 other downstream 164051 8908516 ~ 9035607 (+) False eps8a
TU1952614 other downstream 164244 8908709 ~ 9035607 (+) False eps8a
TU1952621 other downstream 164244 8908709 ~ 9035607 (+) False eps8a
TU1952622 other downstream 217910 8962375 ~ 9035607 (+) False eps8a

Expression Profile