RNA id: XM_036956771.1


Basic Information

Item Value
RNA id XM_036956771.1
length 1968
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC118942856
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8805889 ~ 8808961 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAAGAGGGTTCGGTCTGAAGTTACCACAACAGGAAGCGTCACTGTGCTAAAAACATTGGAGTAGGAAAAGTGCAACAAAACGCTGTCGAACACGAAGCTGCAAGAATGTTTCCTTTTAAGAAAATGTGTTGATTTGTGAAATAATATTTTTATAATCCACAACTGCTCTTCAGTTGATCGTCATCCATCTTGAGAACTGTCGAATTTGCGTCACTAGCAGCCCTCAATAGATAGGTTGTGTTGACCAAAATGGATGACAGCAAGATGGTGGGAGGCAAAGTCAAGAAACCCGGTAAACGAGGCCGTAAACCCGCTAAGATTGATCTGAAAGCGAAGTTGGAGAGGAGCAGGCAGAGCGCCCGGGAGTGCCGAGCCAGGAAGAAGCTCCGGTATCAGTACCTAGAGGAACTCGTGTCCAGCAAGGAGAGGGCCATCTGCGCCCTGAGGGAGGAGCTGGAGATGTACAAGCAGTGGTGTACAGCCATGGACCAGGGGAAGATCCCGTCTGAGATAAAGGCCCTACTGACAGGAGATGAACAGAAGCCTCCTCAGAGCTCCTCCACCAAGAGCTCCAAGAACAGCAACCAGAGCTAATGTGTTGGGAGTGCCAGACCAGAACTAGTCTGACTGTCAGTTTGTTAGAGGTGGCAGccctgggttgtattcattagggaaATTATATCAAATGTTGTGCAACAGAAAACAGGGTGTTCATATAATACCTACCCCCTTTTTTCCATCCCGTTTGCTTCCGTGGTGAATACGACCCAGAGCGAGTCTGTCTGATGAAAGGTTCCAGACCAGAGCTAGGCAGTAGGTACTCAGTCTGTCTAATGAAAGATTCCAGACCAGAGCTAGGCAGTAAGTACTCGGGTCTGTCATGCCAGACCGCTCCACTGTATAAGGCCTCTGTGACGGAGAGTGAAGAGGTGTCTCACCGGTCTGTCTGTTTCAGCCCCTCCCCCCTCTAGAGGAGACGCACAGCAACAGAACTGTCAGAGACACATATCATTACTAACGCTGGAGGACCTTCAGAGTAATAGCTCGTATTATTTGACAGTTGTAATCCACATTACTGGCCTGATTTATCATGCGTGGTTCACTATTGCAACTCTTGGATTCGTTAATGTTAGTAATGTGAAATATGTTATTAGTTGCAGCTATAGACACCTTTAGACAGCCTGTAGTATTGAACAGTTAATCTCAGTGTTTTAGCTTCTACGTGTGAGAATTGAGGAAGCGTTTTAATGGTACATGGATGAAACCAGGACAGAAGAAGTGAAAGGGTGTAGGCTGTGCATGTCCTACCTGGCCTAGACATTCAGACAAAACAAAGCACATATTCACCTTCAAATAAGGAATTACTCTTTGACCTTTCATTGGTTAGTTTGTGTTGGGAAAGGAGCAGAACTATGgtaacatcccaaatggcactccgtTCCCTaaatagagccctggtctaaagtagtgcactatatagggaatagggcaccattggGGACATATATATCTTGTCATAGCAGAAAAGGAAAGATATCATGTATCTGCAGAGATGATATAATGATATACAGCACTGTATGTtgaatttatttatatattttaattgGATCACAGAAAGCCCTTTTTTCCCCGGTTTTGTAGTGTGATGTTGTAGAACGTATAGAAGGTCTGACAGACAACAGAAAGATCTTTCCCATTTTGTAGAGATGTTCAAGTCTCTTGTTTGTGTGAAAGGCTAGAATGGGGACACGTCCTTACCAGAACAGGAGCTGCTGAGGCATTGCTCCACCTATGTTGTCTTTCAGTAATGTTACATTGTATCATGTGGTATCTAATCGAGGCCTAGACGACTCATGTTCTTTCACCATAATGCAACCAAAATATAGTAGCCTGTACCTGTTTTGGTTTACAAATTATGATTATATTGTCCTAAGGAAATTAAATAAGGACTCATTAATAGACATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953013 lncRNA downstream 12183 8793641 ~ 8794263 (-) False G1705485
TU1953014 lncRNA downstream 12183 8793641 ~ 8794263 (-) True G1705485
TU1953008 lncRNA downstream 13314 8789626 ~ 8793132 (-) False G1705484
TU1953007 lncRNA downstream 13949 8789626 ~ 8792497 (-) False G1705484
TU1953011 lncRNA downstream 13949 8789626 ~ 8792497 (-) True G1705484
TU1953028 lncRNA upstream 43874 8852835 ~ 8854728 (-) False G1705491
TU1953029 lncRNA upstream 43874 8852835 ~ 8854728 (-) True G1705491
TU1953052 lncRNA upstream 50139 8859100 ~ 8861698 (-) True G1705504
TU1953065 lncRNA upstream 76623 8885584 ~ 8888167 (-) True G1705513
TU1953095 lncRNA upstream 129675 8938636 ~ 8938899 (-) True G1705530
XM_036958456.1 mRNA downstream 618059 8187334 ~ 8188387 (-) True LOC118942993
XM_036956763.1 mRNA downstream 759430 8024974 ~ 8047016 (-) False pthlha
XM_021595182.2 mRNA downstream 759431 8024974 ~ 8047015 (-) False pthlha
XM_036956750.1 mRNA downstream 803405 7945498 ~ 8003041 (-) False LOC110515713
XM_036956778.1 mRNA upstream 128182 8937143 ~ 8938405 (-) True LOC118942860
XR_005038492.1 mRNA upstream 181770 8990731 ~ 8991221 (-) False LOC118942862
XR_005038491.1 mRNA upstream 181807 8990768 ~ 8991221 (-) False LOC118942862
XR_005038490.1 mRNA upstream 276485 9085446 ~ 9088316 (-) False LOC118942861
XR_005038489.1 mRNA upstream 276485 9085446 ~ 9088322 (-) False LOC118942861
TU1952844 other downstream 273643 8531735 ~ 8532803 (-) False G1705386
TU1952845 other downstream 273643 8531735 ~ 8532803 (-) False G1705386
TU1952846 other downstream 273643 8531735 ~ 8532803 (-) False G1705386
TU1952847 other downstream 273643 8531735 ~ 8532803 (-) False G1705386
TU1952848 other downstream 273643 8531735 ~ 8532803 (-) False G1705386
TU1953186 other upstream 293457 9102418 ~ 9103155 (-) True LOC118942864
TU1953378 other upstream 465636 9274597 ~ 9277074 (-) True LOC118942865
TU1953431 other upstream 659662 9468623 ~ 9474354 (-) True LOC110515809
TU1953656 other upstream 832989 9641950 ~ 9642941 (-) True G1705975
TU1955083 other upstream 1551463 10360424 ~ 10360975 (-) True G1706990

Expression Profile