RNA id: XM_036956774.1


Basic Information

Item Value
RNA id XM_036956774.1
length 3323
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC118942858
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8864331 ~ 8869236 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGTAGAGCTTCTTAACTTCTTGCTCCTATGTGGGACGTCAGCGTCCCACATAGGCTAACTTCCGGTGAAATAGCATAGCACAAAGATACTAAATGCACAAATCGTAATGTTAAACTttcttgtaaatacatgtatctaacatcatttaaaagcttaatttCCTCTTAATCCAACcaccatgtcagatttttaaaatgcttttcagcgaaagcaatcTTACGATAATCTGACGACAGCGCGccacacacacaagtattacAAGCATTTTCCATCCAAACATTAGCGTCACAAAAAGCCAGAAATAGCACTAAAATAATcaattacctttgaagatcttcttcttttGGCAATACAAAAGGTCCAATCTTCACAATAAATGGTTGCTTTGTTCGATTAAATCATGTTTCCATgcataaaacaacacattttgtaAAAGGCTTGTGTCCTGAATTCCGTATCCTTCGACGTTCAACCAGACATGGGATGCAATCAGTCACACAGCATTGACGTTatctagtcatggttggtttctGTGAAATCCTTTGTTTGTTAGTAACACAACGACACCTTGTTAGGTGCGTATTGACCGAAAGGAGGTGACTTGAACCCAGCAAACAATGACCTGATTACGCGCCAATGATCTCACCTGTGCATCTTTGAATGACTGTATTTCTGCCCAATCACCACTGATCCTCTTGAAATCTTGCTTGGTAGATAGCCAATGGGCTTAGGTAAATGGAAATAGCAATTGTTTGTATCAGGGAAGACCAGCTCTTGACCGAAACTCGAGCGTAACGCAGCCATTCGCCATTGGAATTTCTACCAGAAGGAGCCATTTTCTTTGCGCAACGCAGTATTTAGTCAATATAATTTTCCGCTCTTTTATTGAAGTAATTATGGCGAGTAAAGCTGTAAAAGCAAAGGCAAAGTCCAAGTATACGGATCTCCAAGAGATTATTTGCGAGATTGAACGAGAAAGTGACACAGAAATCCCAGATGATCTATCAGATTGTGCGTCAAGTGTGGACAGCAACTTTGAGTACATGTTTCTGCGTGGTGAGGATGCCATTCTCGATTGTCCCAGTCCCTCTGATTCTGATTGGGAGCCCCCACTGAAAGGAGCTGGACCATCTAGCCGGACCCCTGCTGTCTCCGGCTCCACACCTACCCCCGCCCTGCAAGGTGTGAAGTCTGTGACAAAGAAGCGGAGGTGGGGAAGGGCTAAACCTGcaatcagagaggaggagggtcgTTGGCACTCTGTGCTGGAGGAGGATGTGTTGCCTACACCTCCAGTATTCAGACCGAAGAGGCCAACAGGACCTCAGCTGGACATGACCTCTAAGTACAGCCCCATTCAACTTTTTCAGCTGTTTTTCACCTCGGCAGTTGTTGATTCCTTGGTGTCGAACACAAACAAGTATGGTGCTAAGAAGCAGGCAGGcaagaaagagggatggaagcCCATTGCCATTTCAGATTTTTTTGGGTTCATGTCCATGGTCATTTACATGGGTATTGTGAAGCTAAAAACCCTGAAAGACTACTGGAAAACTGCTTCCCTCTATCAACTGCCTTTCCCATCCACGGTCATATCATGCAAAAGGTTTCTGACAATCTCAGGGGCGCTTCATAtcagtgacccagaagttgaTGAGGACAACGAGAAGAAGAGAGGCACAGCTAGGTTTGATAGGCTGTGCAAAATAAAACCTCTCTACCCCAGCATTGTTGAGGCTTGCAAAACCTATTTTCAGCCTGCCCAGAACCTTTCcatagatgagaggatggtagctTCAAAAGCCCGAATTGGCCTAAAACAGTACATGCGCAACAAACCAACTAAATGGGGTTACAAACTGTTTGTTTTGGCCGATTCTGCGTGTGCATATACgtgcaatttttttatttatgagGGGAAGAACAGTTTTGCGACCGGTAATGGACTTAGTTATGACTCTGTTATGCAGTTATTAGATTTTCAACTGCTGGGGAAGGGCTACAAACTTTTTGTGGACAACTTTtacacaagccctaccctgtttACAGAGCTGAGGAAGCGGGATGtgtgggcttgtggcaccattcggCCCAATAGAGTGGGCTTTCCAAAAACCAAGGTGAATGACATGCCTAAGCGGGCTGAGCGGGGTACCATGAGATGGATCCGTGAAGATGGCCTGCTCTTTGTGAAGTGGATGGACACCAGAGAGGTGGTCATGTGCTCCAGtatccacaagtccttcagtggaGATCACGTCGTCAGGCGTGTGAAGGACGCTGCTGGGGCATGGACCACCAAGAATGTCCCCATTCCTGGAGCAATCAAGGACTACAACAAAAGCATGGGAGGTGTAGACCTCTCGGATGCGCTTATTGGATACTACAACGTTCTCCACAAGACAATGAAGTGGTACAAGACATTTTTTTATCATTTCgttgacattgctgtggtgaacgccttcatcctccagaaggaaatggcTCAGAGCTGTGGACatccccccatctcacagctagccttcagggagctgctcatccatgagcttgctagctacagcaagTCCACTGTAGCACCTTCTGTCCCCTCTACGTCTGGCCCCTCTGCTCCAACCAGTAgtgttcacctgcccagattcatCTCTGCAGGCATGAATGTGCCTCAGGGCAAAAAGGGCACAATAGGGAGACGTCGTTGTGTCCTCtgtcacaggaaatgccccatcacctgcaccagcTGTTCAGTAACCCtgtgctttacagcagaaagagactgctattggGCATGGCATCAGAAgaacaatattgtgtagaggactgagggtcttcacaaTATTGTACATTGTACATTGAATGTGTGTAAATAGTTTACCCTTGTTATTTGAAAATGtttcaaatgttcattttttgGGTTTTTTTTGTGGGGTGGTATGTTAGAATGGCATTTGAGTGTTTTGTATATAGTAATTTACTTCAATGTATCACTGTGCCAAAtaggccacttgggtacatttgggcaccttgtgtgggacacctgggtgactacatgctcaatgtcatgtagctcactcatTCCTGAAGATATCTTTCTAAAACTTTTTTCAAATACTGTTGCCATCTTGTGTTCTCCATTTCTACCacccccagcatcctatctgtatgtgTGGATGTTCTTGTTCAGTTGAAAGATGATGCAGcaacaataaaaacagaaaacGAATGTtaatttccttgtattttcttctaccagatctatggtgttctattctcctacattcaattcacatttacacaaaattcagagtgtttcctttcaaatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952593 lncRNA upstream 18267 8845515 ~ 8846064 (+) True G1705227
TU1952577 lncRNA upstream 56385 8804962 ~ 8807946 (+) True G1705216
TU1952572 lncRNA upstream 57530 8803063 ~ 8806801 (+) False G1705216
TU1952580 lncRNA upstream 67055 8796928 ~ 8797276 (+) True G1705217
TU1952553 lncRNA upstream 82886 8780217 ~ 8781445 (+) True G1705211
TU1952557 lncRNA downstream 3529 8872765 ~ 8873260 (+) True G1705214
TU1952643 lncRNA downstream 40756 8909992 ~ 8911381 (+) True G1705248
TU1952662 lncRNA downstream 93688 8962924 ~ 8965174 (+) True G1705261
TU1952665 lncRNA downstream 94776 8964012 ~ 8971470 (+) False G1705263
TU1952669 lncRNA downstream 96912 8966148 ~ 8968201 (+) False G1705263
XM_036956770.1 mRNA upstream 73261 8770887 ~ 8791070 (+) True LOC118942855
XM_036956767.1 mRNA upstream 119866 8684919 ~ 8744465 (+) False LOC118936349
XM_036956768.1 mRNA upstream 119866 8685074 ~ 8744465 (+) False LOC118936349
XM_036956769.1 mRNA upstream 119866 8705150 ~ 8744465 (+) False LOC118936349
XM_036956766.1 mRNA upstream 194933 8608330 ~ 8669398 (+) True LOC110512606
XM_036956775.1 mRNA downstream 39050 8908286 ~ 9091490 (+) False eps8a
XR_005038493.1 mRNA downstream 155138 9024374 ~ 9027016 (+) True LOC118942863
XM_036956776.1 mRNA downstream 213560 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA downstream 213560 9082796 ~ 9084558 (+) True LOC118942859
XM_036956786.1 mRNA downstream 347989 9217225 ~ 9241339 (+) False zgc:194209
TU1952595 other upstream 13224 8850398 ~ 8851107 (+) True G1705229
TU1952417 other upstream 303119 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other upstream 303119 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other upstream 303119 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other upstream 303119 8543972 ~ 8561212 (+) False LOC118942994
TU1952618 other downstream 39280 8908516 ~ 9035607 (+) False eps8a
TU1952614 other downstream 39473 8908709 ~ 9035607 (+) False eps8a
TU1952621 other downstream 39473 8908709 ~ 9035607 (+) False eps8a
TU1952622 other downstream 93139 8962375 ~ 9035607 (+) False eps8a
TU1952681 other downstream 106068 8975304 ~ 8976565 (+) True G1705267

Expression Profile