RNA id: XM_036956775.1


Basic Information

Item Value
RNA id XM_036956775.1
length 3866
RNA type mRNA
GC content 0.54
exon number 23
gene id eps8a
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8908286 ~ 9091490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATTCCCGGTTCAGGACCTGTAGCAAGGTCCATGGGCTGCACACAATTAATCCGAATACGGTACGGCTCGTGCGTAAACGGCCTGATTGCGGTAGAGGGCGTCGGTGCCATAGCGGCGACGGTGCCTGCAGaccagaggggaggggagaaagagaggggaagagggagggaggtaaggcGGATCTTAGTTAGACGAAACAGACCACACATTTGCAATAGAAGTACCGTAACCGTTTAGTTCAAACGCTGTTTTCTACGGTCCTGCGACTCTCTACTTTTGCCAGCCTGTGCGTGACCTTTTGACGCCAGGTGCGTCGCAGAGGACGAGGCGGTCTGGATACGGCGACCCGCCGCTCGGACGTCCAAGGTGATAGAAGTCAACTAATACTCTACTTCAGGGCTATTGTATTCTTACCAGAAAGAATAGGAGTCTGCTTGTGCCATGCGCTAATACAGAGGGTTTGTGAAGCCATTTTCAGCAGGTGACTGTCCTCTGAGTTCACCTCCCCTTCCAGGATGAACGGCTACGCcccaccctccttcccccagGGAGGGTTCGACTCATACACCTCACAACTCAAtggtcATGGTTCCCAGTCCACAGAGCCTCCAGATTGCAACGCCAGGTCCAACACCAAGTCCATCTCTAAAGCCCTTTACGAACAACGGAAGAACTACACCAAAAACAGCATCAACAGTATGACGAACACCTCGCAGTACCATGTTGAGcaccTGACCACATTTGTTCTGGACAGGAAGGAAGCCATgatcaacactgaggatggaATCAGGAAGCTCCGCCTGCTGGATGCCAAGGGGAAGGTATGGACCCAGGACATGTTGCTGCAGGTGGAGGAGAAGACAGTCAGCCTCATCGACCCAGAGACCAAGAATGAGTTGGAGAACTTTCCCTTGGGGACCATCATGCACTGCCAGGCAGTGATGTCATCCTGCAACTACGACTCCATCTTGGCTCTGGTGTGTAAGGAGCCGGGCCAGGGCAAACCAGACCTGCACCTGTTCCAGTGTGACGACAtcaaggcCAACCTGATCCAGGCTGATATAGAGGGGGCCATGATGGATCAGAAGGGAGGCAAGGTGAAGAAGAGACCTGAAACACTACGGATGATTCTGAAGAGTGACGGGGTCATCCCGCCGCCCCCCGAGGCGCCCGCCCCCGAGCCCCCCGCCACCCTCACCCAGGTGGACGTGAGGAGTCGTGTGGCAGCCTGGTCAGCCTGGGCGGCGGAGCAGCAGGACTATGATAAACAGCCTCAGTATTCTGACCAGAATGAACCTTCGGAGATGATGGCTACCAGAGTGGATCGAGACGTGCAAATCCTGAACCACATTCTGGACCACATCGAGTTCTTCGTGACCAAACTGCAGAAAGCGGCTGAGGCCTTCAACGAGCTCTCTAAGAGGAAGAAATCTAAAAAGAACAAGAAGAAGGGACCCGGAGaGGGAGTGCTAACACTGCGAGCCAAGCCTCCCACTCAGGAGGAGTTTGTTGACTGTTTCCAGAAGTTCAAACATGCCTTCAACCTGCTGgggAAGTTGAAGTCCCACATCCAGAACCCCAGCGCTGATGATCTGGTCCACTTCCTGTTCACACCACTCAGGATGGTGATCCAGACCTCTGGAGGGACAGAGCTGGCTAAGAGCGTGGTGGTTCCTCTGTTGACCATAGAGGCTATAGACTTCCTGCACTCAGCTGGGACGGCCGAGGAAAGACACCTGTGGGTTGCCCTGGGGGAGGGGTGGACCAAGTGCAGGTTGGAGTGGCCTAAGGACCACTACTTCCCTCCGTGTACACTGCAGTTCCGTGATGGTTGGGAACCTCCCATGATGCCGTTCGTCCCCCAATCACGAGAGGCAGAGCTGAATCAGCTGACCCAGACCCTCGCCCACTCTGAGATCCTTAGACAGGAGGAGATTGTTCACAGGCTGTCTACTGAGCATCCGGGTGTACAGGACTTCCAGTCTTCACAAGGGTATGCATTGGACAACAAGGCCTACAAACGCATGCACCTCTCGGACCAGGGCATGGCCGTGCAGGCCTTCAACCAGGCCGTCTCACGACACGTAGACCGGAACTACGAGGCCCACGGCAGCAGAGGTCAGCCAAAACTGTTTGCCAAATCCAAGTATGACTTTGTGGCCAGAAACAACACAGAGCTGTCATTGGTAAAGGACGAGGTTGTGGAGGTGCTGGATGACAGGAAGCAGTGGTGGAAAGTGTGTAACTGCTCCGGGGCGTCTGGCTATGTGCCAAACAACATCCTGGAGGTCACCAAGGCTGTGGACGTCACGGTGAGGGGGGAACCCATCTATAGCCATACTATACAGaaaCAGCGGACGGACTACGTCCCCAAACCCATGGCCACCCCCACGCCCCCCATCCCCACACCCCCCATCCCCACACCCCTCCCTCCTGCCCCGCCACgtctccccacccctcccctgCCCCCCCCGGCCGaacccccccgcccccctcccaGCACGGTGAGCAGACAGAGCAGCAACACCTCCAGCGACTCCGGAAGCATCCCAGCCAGCGTCACCATGAGAGACCACCCAAACCAGAGACCCCCGCCAGTCAACCGGAGGAAGTCCAATATGGAGGAGGTTCAGGACGAGTTGATGCACCGCCTCACGTTGGGTCGAAGCGCCAACAAGAAGTTTGCTGTTCCTGCTCGCAGCACCTCCCTCCCGTCCGTCAACATCACGTACGACTCCTCCCCTGACGAGGTCAAGGCCTGGCTGCAGCTGAAGGGGTTCAGCTCTGTTACCATTACCAGTCTGGGAGTGTTAACCGGAGCCCAGCTGTTCTCTCTCAATAAGGAGGAGCTGAAGACGGTGTGTCCAGACGACGGGGCCAGGGTCTTCAGTCAGGTGACCGTCCAGAAGGCTGCTCTGGAGAGGAGTTCAGGGTCAGAGCTGCAGGAGATCATGCGGAGGCGTCAGGAGAAGCTGTCGGTCACAGCCTGTGACTCAGGGGTGGAGTCATTTGACGAGTGCAGCAGCCACTGAACCCTCCGGGCCTCGCCCACCTCCCTCATACCACGCCCCTTTACGTTGTCACGGTTTCTGTTTCCAGGACGCCACGGAGCGCGCTCAGTTCGCTGAGATCCTGAGACGACGTCAGCAGCTTCTGGAGCAGTCACCTTAGAAGCGAAGCAacactagacagacagactggaggGTTCAACATGGACTACAGCACACAGAGTTAGCATCCCAACTGGGGATGTCTGATCACAATACCTGTGGATTTATACACTTACACTTAAATGAACTATTGTTTTTGATTCAAATGTGTCCGTTATGTCTTGCACAGGATGCTGGGAAAAATAGAAGGAGAAAATAGTTTCAACCTACACCTCATTGGGCCAGAGTTGTCCTAGTtacaggtgggggtggggggggggggggggtgtaggatAACACTGGACACAGAATGGATCAGGTGtggtcttgggggtgggggtaggaTAACACTGGACACAGAATGGATCAGGTGTGGTCTTGACCTACAGACGAAATAGAACCGACCAAAATAACCATGGTCTGTGTATAGATTCTGATCTACAGTATTTCAGTTATGAATGATAAGATGTTTATAATAACCAAACGTTGAATATAATCATTATTGTGTAAATCTTCTGGTTTACTGGTAAAGAGAATAATattatatttatgtatatatccTCTTTTATGTTATGGTAATATGCCAAAATAGTAACTTGACATATAAATGACATTGGTCAAATGAATTTCAGATACAGGTGTTTAAGAGTGTAAAGATGTTTTCTCTCATAAGGTGCATCAGATCATTTTGACTGATAAACATGCTTCCATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952557 lncRNA upstream 35026 8872765 ~ 8873260 (+) True G1705214
TU1952593 lncRNA upstream 62222 8845515 ~ 8846064 (+) True G1705227
TU1952577 lncRNA upstream 100340 8804962 ~ 8807946 (+) True G1705216
TU1952572 lncRNA upstream 101485 8803063 ~ 8806801 (+) False G1705216
TU1952580 lncRNA upstream 111010 8796928 ~ 8797276 (+) True G1705217
TU1952728 lncRNA downstream 3223 9094713 ~ 9095086 (+) True G1705304
TU1952729 lncRNA downstream 3906 9095396 ~ 9095606 (+) True G1705305
TU1952735 lncRNA downstream 10944 9102434 ~ 9106488 (+) False G1705309
TU1952737 lncRNA downstream 10944 9102434 ~ 9104387 (+) False G1705309
TU1952738 lncRNA downstream 10944 9102434 ~ 9106488 (+) False G1705309
XM_036956772.1 mRNA upstream 9915 8819609 ~ 8898371 (+) True LOC118942857
XM_036956774.1 mRNA upstream 39050 8864331 ~ 8869236 (+) True LOC118942858
XM_036956770.1 mRNA upstream 117216 8770887 ~ 8791070 (+) True LOC118942855
XM_036956767.1 mRNA upstream 163821 8684919 ~ 8744465 (+) False LOC118936349
XM_036956768.1 mRNA upstream 163821 8685074 ~ 8744465 (+) False LOC118936349
XM_036956786.1 mRNA downstream 125735 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA downstream 125737 9217227 ~ 9241339 (+) True zgc:194209
XM_036956789.1 mRNA downstream 245391 9336881 ~ 9354472 (+) False LOC110507941
XM_036956790.1 mRNA downstream 245391 9336881 ~ 9354472 (+) False LOC110507941
XM_036956791.1 mRNA downstream 245392 9336882 ~ 9354472 (+) False LOC110507941
TU1952595 other upstream 57179 8850398 ~ 8851107 (+) True G1705229
TU1952417 other upstream 347074 8538928 ~ 8561212 (+) False LOC118942994
TU1953589 other downstream 563808 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 567841 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 656695 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 824223 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 1042898 10134388 ~ 10135384 (+) True G1706152

Expression Profile