RNA id: TU1952621


Basic Information

Item Value
RNA id TU1952621
length 786
RNA type TUCP
GC content 0.55
exon number 9
gene id eps8a
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8908286 ~ 9091490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATAGGAGTCTGCTTGTGCCATGCGCTAATACAGAGGGTTTGTGAAGCCATTTTCAGCAGGTGACTGTCCTCTGTGTGCCCCATCAGGTGACTGTCCTCTGAGTTCACCTCCCCTTCCAGGATGAACGGCTACGCcccaccctccttcccccagGGAGGGTTCGACTCATACACCTCACAACTCAAtggtcATGGTTCCCAGTCCACAGAGCCTCCAGATTGCAACGCCAGGTCCAACACCAAGTCCATCTCTAAAGCCCTTTACGAACAACGGAAGAACTACACCAAAAACAGCATCAACAGTATGACGAACACCTCGCAGTACCATGTTGAGcaccTGACCACATTTGTTCTGGACAGGAAGGAAGCCATgatcaacactgaggatggaATCAGGAAGCTCCGCCTGCTGGATGCCAAGGGGAAGGTATGGACCCAGGACATGTTGCTGCAGGTGGAGGAGAAGACAGTCAGCCTCATCGACCCAGAGACCAAGAATGAGTTGGAGAACTTTCCCTTGGGGACCATCATGCACTGCCAGGCAGTGATGTCATCCTGCAACTACGACTCCATCTTGGCTCTGGTGTGTAAGGAGCCGGGCCAGGGCAAACCAGACCTGCACCTGTTCCAGTGTGACGACAtcaaggcCAACCTGATCCAGGCTGATATAGAGGGGGCCATGATGGATCAGAAGGGAGGCAAGGTGAAGAAGAGACCTGAAACACTACGGATGATTCTGAAGAGTGACGGGGTCATCCCGCCGCCCCCCGAGGCGCCCGCCCCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952557 lncRNA upstream 35449 8872765 ~ 8873260 (+) True G1705214
TU1952593 lncRNA upstream 62645 8845515 ~ 8846064 (+) True G1705227
TU1952577 lncRNA upstream 100763 8804962 ~ 8807946 (+) True G1705216
TU1952572 lncRNA upstream 101908 8803063 ~ 8806801 (+) False G1705216
TU1952580 lncRNA upstream 111433 8796928 ~ 8797276 (+) True G1705217
TU1952709 lncRNA downstream 583 9036190 ~ 9036407 (+) True G1705288
TU1952715 lncRNA downstream 10843 9046450 ~ 9046714 (+) True G1705293
TU1952717 lncRNA downstream 11690 9047297 ~ 9047704 (+) True G1705295
TU1952718 lncRNA downstream 12260 9047867 ~ 9048128 (+) True G1705296
TU1952720 lncRNA downstream 15785 9051392 ~ 9052293 (+) True G1705297
XM_036956772.1 mRNA upstream 10338 8819609 ~ 8898371 (+) True LOC118942857
XM_036956774.1 mRNA upstream 39473 8864331 ~ 8869236 (+) True LOC118942858
XM_036956770.1 mRNA upstream 117639 8770887 ~ 8791070 (+) True LOC118942855
XM_036956767.1 mRNA upstream 164244 8684919 ~ 8744465 (+) False LOC118936349
XM_036956776.1 mRNA downstream 47189 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA downstream 47189 9082796 ~ 9084558 (+) True LOC118942859
XM_036956786.1 mRNA downstream 181618 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA downstream 181620 9217227 ~ 9241339 (+) True zgc:194209
XM_036956789.1 mRNA downstream 301274 9336881 ~ 9354472 (+) False LOC110507941
TU1952595 other upstream 57602 8850398 ~ 8851107 (+) True G1705229
TU1952417 other upstream 347497 8538928 ~ 8561212 (+) False LOC118942994
TU1952637 other downstream 25382 9060989 ~ 9075412 (+) False eps8a
TU1952640 other downstream 29859 9065466 ~ 9075412 (+) False eps8a
TU1952626 other downstream 39885 9075492 ~ 9091405 (+) False eps8a
TU1952627 other downstream 39885 9075492 ~ 9091405 (+) False eps8a
TU1952628 other downstream 39885 9075492 ~ 9091405 (+) False eps8a

Expression Profile