RNA id: TU1952615


Basic Information

Item Value
RNA id TU1952615
length 1063
RNA type TUCP
GC content 0.48
exon number 7
gene id eps8a
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8908286 ~ 9091490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCCACTCTCctaataacccctactactggtaGTCTGTAGTCCTTAGCTCCACTCTCctaataacccctactactggtaGTCTGTAGTCCTTATCTCCACTCTCCTAATAACCCCTACTACTAGTAGTCTGTAGTCCTTAGCTCCACTCCCctaataacccctactactggtaGTCTGTAGTCCTAAACTCCACTCTCctaataacccctactactggtaGTCTGTAGTCCTTATCTCCACTCTCCTAATAACCCCTGCTACTGATAGCCTGTAGTCCAGTGCTCTTACTACTGTGTACTGAGCTCATTCAGATCATGCACATAGCTTCATAGGCAATACCATTCCATATACTGTACATCTCTATGTCATTGACATGCTCATAaccacattaaacacattaattcaatatacagtacatgcacaTAGCCTTGATTGTTTGACATTTGAAGTCAGTAACACAGAACTTTGCATTGTGTAACCCGAGGTTACTTTAAACTCCCATCGGACAAATGGAATCACAAATTACTCACTCATGGATTCAAACAACGGAAGAACTACACCAAAAACAGCATCAACAGTATGACGAACACCTCGCAGTACCATGTTGAGcaccTGACCACATTTGTTCTGGACAGGAAGGAAGCCATgatcaacactgaggatggaATCAGGAAGCTCCGCCTGCTGGATGCCAAGGGGAAGGTATGGACCCAGGACATGTTGCTGCAGGTGGAGGAGAAGACAGTCAGCCTCATCGACCCAGAGACCAAGAATGAGTTGGAGAACTTTCCCTTGGGGACCATCATGCACTGCCAGGCAGTGATGTCATCCTGCAACTACGACTCCATCTTGGCTCTGGTGTGTAAGGAGCCGGGCCAGGGCAAACCAGACCTGCACCTGTTCCAGTGTGACGACAtcaaggcCAACCTGATCCAGGCTGATATAGAGGGGGCCATGATGGATCAGAAGGGAGGCAAGGTGAAGAAGAGACCTGAAACACTACGGATGATTCTGAAGAGTGACGGGGTCATCCCGCCGCCCCCCGAGGCGCCCGCCCCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952699 lncRNA upstream 7978 9008924 ~ 9009347 (+) True G1705278
TU1952696 lncRNA upstream 16465 8999455 ~ 9000860 (+) True G1705275
TU1952691 lncRNA upstream 20607 8995040 ~ 8996718 (+) False G1705274
TU1952709 lncRNA downstream 583 9036190 ~ 9036407 (+) True G1705288
TU1952715 lncRNA downstream 10843 9046450 ~ 9046714 (+) True G1705293
TU1952717 lncRNA downstream 11690 9047297 ~ 9047704 (+) True G1705295
TU1952718 lncRNA downstream 12260 9047867 ~ 9048128 (+) True G1705296
TU1952720 lncRNA downstream 15785 9051392 ~ 9052293 (+) True G1705297
XM_036956772.1 mRNA upstream 118954 8819609 ~ 8898371 (+) True LOC118942857
XM_036956774.1 mRNA upstream 148089 8864331 ~ 8869236 (+) True LOC118942858
XM_036956770.1 mRNA upstream 226255 8770887 ~ 8791070 (+) True LOC118942855
XM_036956767.1 mRNA upstream 272860 8684919 ~ 8744465 (+) False LOC118936349
XM_036956776.1 mRNA downstream 47189 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA downstream 47189 9082796 ~ 9084558 (+) True LOC118942859
XM_036956786.1 mRNA downstream 181618 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA downstream 181620 9217227 ~ 9241339 (+) True zgc:194209
XM_036956789.1 mRNA downstream 301274 9336881 ~ 9354472 (+) False LOC110507941
TU1952700 other upstream 4162 9011926 ~ 9013163 (+) True G1705279
TU1952681 other upstream 40760 8975304 ~ 8976565 (+) True G1705267
TU1952595 other upstream 166218 8850398 ~ 8851107 (+) True G1705229
TU1952440 other upstream 456113 8538928 ~ 8561212 (+) False LOC118942994
TU1952637 other downstream 25382 9060989 ~ 9075412 (+) False eps8a
TU1952640 other downstream 29859 9065466 ~ 9075412 (+) False eps8a
TU1952626 other downstream 39885 9075492 ~ 9091405 (+) False eps8a
TU1952627 other downstream 39885 9075492 ~ 9091405 (+) False eps8a
TU1952628 other downstream 39885 9075492 ~ 9091405 (+) False eps8a

Expression Profile