RNA id: TU1952639


Basic Information

Item Value
RNA id TU1952639
length 296
lncRNA type sense_over
GC content 0.59
exon number 2
gene id eps8a
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8908286 ~ 9091490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTGGAGGGACAGAGCTGGCTAAGAGCGTGGTGGTTCCTCTGTTGACCATAGAGGCTATAGACTTCCTGCACTCAGCTGGGACGGCCGAGGAAAGACACCTGTGGGTTGCCCTGGGGGAGGGGTGGACCAAGTGCAGGTTGGAGTGGCCTAAGGACCACTACTTCCCTCCGTGTACACTGCAGTTCCGTGATGGTTGGGAACCTCCCATGATGCCGTTCGTCCCCCAATCACGAGAGGCAGAGCTGAATCAGCTGACCCAGACCCTCGCCCACTCTGAGATCCTTAGACAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952720 lncRNA upstream 8696 9051392 ~ 9052293 (+) True G1705297
TU1952718 lncRNA upstream 12861 9047867 ~ 9048128 (+) True G1705296
TU1952717 lncRNA upstream 13285 9047297 ~ 9047704 (+) True G1705295
TU1952715 lncRNA upstream 14275 9046450 ~ 9046714 (+) True G1705293
TU1952709 lncRNA upstream 24582 9036190 ~ 9036407 (+) True G1705288
TU1952641 lncRNA downstream 449 9065466 ~ 9075412 (+) False eps8a
TU1952728 lncRNA downstream 29696 9094713 ~ 9095086 (+) True G1705304
TU1952729 lncRNA downstream 30379 9095396 ~ 9095606 (+) True G1705305
TU1952735 lncRNA downstream 37417 9102434 ~ 9106488 (+) False G1705309
TU1952737 lncRNA downstream 37417 9102434 ~ 9104387 (+) False G1705309
XR_005038493.1 mRNA upstream 33973 9024374 ~ 9027016 (+) True LOC118942863
XM_036956772.1 mRNA upstream 162618 8819609 ~ 8898371 (+) True LOC118942857
XM_036956774.1 mRNA upstream 191753 8864331 ~ 8869236 (+) True LOC118942858
XM_036956770.1 mRNA upstream 269919 8770887 ~ 8791070 (+) True LOC118942855
XM_036956769.1 mRNA upstream 316524 8705150 ~ 8744465 (+) False LOC118936349
XM_036956776.1 mRNA downstream 17779 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA downstream 17779 9082796 ~ 9084558 (+) True LOC118942859
XM_036956786.1 mRNA downstream 152208 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA downstream 152210 9217227 ~ 9241339 (+) True zgc:194209
XM_036956789.1 mRNA downstream 271864 9336881 ~ 9354472 (+) False LOC110507941
TU1952622 other upstream 25382 8962375 ~ 9035607 (+) False eps8a
TU1952640 other downstream 449 9065466 ~ 9075412 (+) False eps8a
TU1952626 other downstream 10475 9075492 ~ 9091405 (+) False eps8a
TU1952627 other downstream 10475 9075492 ~ 9091405 (+) False eps8a
TU1952628 other downstream 10475 9075492 ~ 9091405 (+) False eps8a
TU1952630 other downstream 10475 9075492 ~ 9091405 (+) False eps8a

Expression Profile