RNA id: TU1952628


Basic Information

Item Value
RNA id TU1952628
length 1342
RNA type TUCP
GC content 0.50
exon number 6
gene id eps8a
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8908286 ~ 9091490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccgcccccctcccaGCACGGTGAGCAGACAGAGCAGCAACACCTCCAGCGACTCCGGAAGCATCCCAGCCAGCGTCACCATGAGAGACCACCCAAACCAGAGACCCCCGCCAGTCAACCGGAGGAAGTCCAACATGGAGGAGGTTCAGGACGAGTTGATGCACCGCCTCACGTTGGGTCGAAGCGCCAACAAGAAGTTTGCTGTTCCTGCTCGCAGCACCTCCCTCCCGTCCGTCAACATCACGTACGACTCCTCCCCTGACGAGGTCAAGGCCTGGCTGCAGCTGAAGGGGTTCAGCTCTGTTACCATTACCAGTCTGGGAGTGTTAACCGGAGCCCAGCTGTTCTCTCTCAATAAGGAGGAGCTGAAGACGGTGTGTCCAGACGACGGGGCCAGGGTCTTCAGTCAGGTGACCGTCCAGAAGGCTGCTCTGGAGGTCTTCTTCTGACCACTGCAGTCTTCAGACTCTAAACTCTCACTAAGAGGAGTTCAGGGTCAGAGCTGCAGGAGATCATGCGGAGGCGTCAGGAGAAGCTGTCGGTCACAGCCTGTGACTCAGGGGTGGGAGTCATTTGACGAGTGCAGCAGCCACTGAACCCTCCGGGCCTCGCCCACCTCCCTCATACCACGCCCCTTTACGTTGTCACGGTTTCTGTTTCCAGGACGCCACGGAGCGCGCTCAGTTCGCTGAGATCCTGAGACGACGTCAGCAGCTTCTGGAGCAGTCACCTTAGAAGCGAAGCAacactagacagacagactggaggGTTCAACATGGACTACAGCACACAGAGTTAGCATCCCAACTGGGGATGTCTGATCACAATACCTGTGGATTTATACACTTACACTTAAATGAACTATTGTTTTTGATTCAAATGTGTCCGTTATGTCTTGCACAGGATGCTGGGAAAAATAGAAGGAGAAAATAGTTTCAACCTACACCTCATTGGGCCAGAGTTGTCCTAGTtacaggtgggggtggggggggggggggggtgtaggatAACACTGGACACAGAATGGATCAGGTGtggtcttgggggtgggggtaggaTAACACTGGACACAGAATGGATCAGGTGTGGTCTTGACCTACAGACGAAATAGAACCGACCAAAATAACCATGGTCTGTGTATAGATTCTGATCTACAGTATTTCAGTTATGAATGATAAGATGTTTATAATAACCAAACGTTGAATATAATCATTATTGTGTAAATCTTCTGGTTTACTGGTAAAGAGAATAATattatatttatgtatatatccTCTTTTATGTTATGGTAATATGCCAAAATAGTAACTTGACATATAAATGACATTGGTCAAATGAATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952641 lncRNA upstream 80 9065466 ~ 9075412 (+) False eps8a
TU1952639 lncRNA upstream 10475 9060989 ~ 9065017 (+) False eps8a
TU1952720 lncRNA upstream 23199 9051392 ~ 9052293 (+) True G1705297
TU1952718 lncRNA upstream 27364 9047867 ~ 9048128 (+) True G1705296
TU1952717 lncRNA upstream 27788 9047297 ~ 9047704 (+) True G1705295
TU1952728 lncRNA downstream 3308 9094713 ~ 9095086 (+) True G1705304
TU1952729 lncRNA downstream 3991 9095396 ~ 9095606 (+) True G1705305
TU1952735 lncRNA downstream 11029 9102434 ~ 9106488 (+) False G1705309
TU1952737 lncRNA downstream 11029 9102434 ~ 9104387 (+) False G1705309
TU1952738 lncRNA downstream 11029 9102434 ~ 9106488 (+) False G1705309
XR_005038493.1 mRNA upstream 48476 9024374 ~ 9027016 (+) True LOC118942863
XM_036956772.1 mRNA upstream 177121 8819609 ~ 8898371 (+) True LOC118942857
XM_036956774.1 mRNA upstream 206256 8864331 ~ 8869236 (+) True LOC118942858
XM_036956770.1 mRNA upstream 284422 8770887 ~ 8791070 (+) True LOC118942855
XM_036956769.1 mRNA upstream 331027 8705150 ~ 8744465 (+) False LOC118936349
XM_036956786.1 mRNA downstream 125820 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA downstream 125822 9217227 ~ 9241339 (+) True zgc:194209
XM_036956789.1 mRNA downstream 245476 9336881 ~ 9354472 (+) False LOC110507941
XM_036956790.1 mRNA downstream 245476 9336881 ~ 9354472 (+) False LOC110507941
XM_036956791.1 mRNA downstream 245477 9336882 ~ 9354472 (+) False LOC110507941
TU1952637 other upstream 80 9060989 ~ 9075412 (+) False eps8a
TU1952640 other upstream 80 9065466 ~ 9075412 (+) False eps8a
TU1952615 other upstream 39885 9017325 ~ 9035607 (+) False eps8a
TU1952619 other upstream 39885 9027375 ~ 9035607 (+) False eps8a
TU1952700 other upstream 62329 9011926 ~ 9013163 (+) True G1705279
TU1953589 other downstream 563893 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 567926 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 656780 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 824308 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 1042983 10134388 ~ 10135384 (+) True G1706152

Expression Profile