RNA id: XR_005038493.1


Basic Information

Item Value
RNA id XR_005038493.1
length 1223
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC118942863
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9024374 ~ 9027016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAGTCTACTACCGTACATTCAGCGTGACTAACACCCCACAGTACCATGTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTAACACCCCACAGTACCATGTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTAACACCCCACAGTACCATGTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTAACACCCCACAGTACCATGTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTAACACCCCACAGTACCATGTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTAACACCCCACAGTACCATGTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTAACACCCCACAGTACCATGTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTACCACCCCACAGTACCATGTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTACCACCATGTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTACCACCATGTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTACCACCATGTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTACCACCCCACAGTACCATGTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTACCACCATGTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTACCACCATGTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTAACACCATCTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTACCACCATGTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTACCACCATGTTGAGGTCAGTCTACCACCGTACATACAGCGTGACTAACACCCCACAGTACCATGTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTACCACCATGTTGAGGTCAGTCTACTACCGTACATACAGCGTGACTAACACCCCACAGTACCATGTGGAGGTCAGTCTACTACCGTACATACAGCGTGACTACCACCATGTTGAGGTCAGTCTACCACCGTACATACAGCGTGACTAACACCCCACAGTACCATGTTGAGGTCAGTCTACTACCGTACATTCACAATGTGTTAGTGGTAGGGTACAGATTGTTACTAATCTGTGTCCCaaaccctctcccatctctcctatcCCCTCTGTGTCCCaaaccctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952699 lncRNA upstream 15027 9008924 ~ 9009347 (+) True G1705278
TU1952696 lncRNA upstream 23514 8999455 ~ 9000860 (+) True G1705275
TU1952691 lncRNA upstream 27656 8995040 ~ 8996718 (+) False G1705274
TU1952694 lncRNA upstream 27656 8995040 ~ 8996718 (+) False G1705274
TU1952695 lncRNA upstream 27656 8995040 ~ 8996718 (+) True G1705274
TU1952709 lncRNA downstream 9174 9036190 ~ 9036407 (+) True G1705288
TU1952715 lncRNA downstream 19434 9046450 ~ 9046714 (+) True G1705293
TU1952717 lncRNA downstream 20281 9047297 ~ 9047704 (+) True G1705295
TU1952718 lncRNA downstream 20851 9047867 ~ 9048128 (+) True G1705296
TU1952720 lncRNA downstream 24376 9051392 ~ 9052293 (+) True G1705297
XM_036956772.1 mRNA upstream 126003 8819609 ~ 8898371 (+) True LOC118942857
XM_036956774.1 mRNA upstream 155138 8864331 ~ 8869236 (+) True LOC118942858
XM_036956770.1 mRNA upstream 233304 8770887 ~ 8791070 (+) True LOC118942855
XM_036956767.1 mRNA upstream 279909 8684919 ~ 8744465 (+) False LOC118936349
XM_036956776.1 mRNA downstream 55780 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA downstream 55780 9082796 ~ 9084558 (+) True LOC118942859
XM_036956786.1 mRNA downstream 190209 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA downstream 190211 9217227 ~ 9241339 (+) True zgc:194209
XM_036956789.1 mRNA downstream 309865 9336881 ~ 9354472 (+) False LOC110507941
TU1952700 other upstream 11211 9011926 ~ 9013163 (+) True G1705279
TU1952681 other upstream 47809 8975304 ~ 8976565 (+) True G1705267
TU1952595 other upstream 173267 8850398 ~ 8851107 (+) True G1705229
TU1952417 other upstream 463162 8538928 ~ 8561212 (+) False LOC118942994
TU1952619 other downstream 359 9027375 ~ 9035607 (+) False eps8a
TU1952637 other downstream 33973 9060989 ~ 9075412 (+) False eps8a
TU1952640 other downstream 38450 9065466 ~ 9075412 (+) False eps8a
TU1952626 other downstream 48476 9075492 ~ 9091405 (+) False eps8a
TU1952627 other downstream 48476 9075492 ~ 9091405 (+) False eps8a

Expression Profile