RNA id: XR_005038490.1


Basic Information

Item Value
RNA id XR_005038490.1
length 2738
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC118942861
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9085093 ~ 9090115 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATATAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCTTAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATATAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGTGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGTGGGTATAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGTGGGTATAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGTGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATATAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCTTAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGTGGGTATAGCCATGGTAGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGTGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCTTAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGTGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGTGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCTTAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCTTAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCTTAATGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGTGGGTATAGCCATGGTAGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCTTAAAGCCATGGTGGTTATCTAGGAAGGAGACCGGGAGGTGGGTATAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATATAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGTGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACTAGGAGGTGGGTATAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCTTAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCGGGAGGAGGGTTCTTAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATAAAGCCATGGTAGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATATAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCTTAAAGCCATGGTGGTCATCTAGGAAGGAGACCAGGAGGAGGGTATAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCTTAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGTGGGTATAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCTTAAAGCCATGGTGGTTATCTAGGAATGAGACCAGGAGGAGGGTTCATATAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGTGGGTATAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGTGGGTATAGCCATGGTGGTTATCTAGGAAGGAGACCGGGAGGAGGGTTCTTAAAGCCATGGTGGTTATCTAGGAATGAGACCAGGAGGAGGGTTCATATAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCCTAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCATAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCCTAAAGCCATGGTGGTTATCTAGGAAGGAGACCAGGAGGAGGGTTCTTAAAGCCATGGTGGTTATCTAGGAGGGGGAATCTCAGTTTTTAGTTTCCATCTGCTGGCCAGCTTCACAACATTTAGAAAAACAGCCTGTTATCATACTTATTTAAGTATGAGAAAATATTGATCCAAACTTAAGACTGTTTTTCAATGTGAGCAGTTGATACAAGACCTACTGTATGTTATATTGACCTGCACACTGGATTGTCTAAGTGGTGGATTGGATTTAGAACACAGACCGGTGAGGTGTGTTAGCCTAGTGAGACAGGTGTGGAGAAGTCCACAGACCAATGAGGTGTGTTAGCCTAGTGAGACAGGTGTGCAGAAGTCCTGAACAGAAGAGAGCCGTGACTACATGAACGCTGGCCAACAGAGTAGAGCCTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953173 lncRNA downstream 6468 9078071 ~ 9078978 (-) False G1705597
TU1953174 lncRNA downstream 6468 9078431 ~ 9078978 (-) True G1705597
TU1953169 lncRNA downstream 10037 9069389 ~ 9075409 (-) False G1705595
TU1953170 lncRNA downstream 10037 9073707 ~ 9075409 (-) True G1705595
TU1953164 lncRNA downstream 28803 9056279 ~ 9056643 (-) True G1705592
TU1953191 lncRNA upstream 11745 9100061 ~ 9101832 (-) False LOC118942864
TU1953207 lncRNA upstream 50610 9138926 ~ 9140928 (-) True G1705618
TU1953209 lncRNA upstream 55788 9144104 ~ 9148974 (-) True G1705620
TU1953211 lncRNA upstream 62165 9150481 ~ 9150713 (-) True G1705622
TU1953219 lncRNA upstream 79707 9168023 ~ 9168487 (-) True G1705630
XR_005038492.1 mRNA downstream 94225 8990731 ~ 8991221 (-) False LOC118942862
XR_005038491.1 mRNA downstream 94225 8990768 ~ 8991221 (-) False LOC118942862
XM_036956778.1 mRNA downstream 147041 8937143 ~ 8938405 (-) True LOC118942860
XM_036956771.1 mRNA downstream 276485 8806446 ~ 8808961 (-) False LOC118942856
XM_036958456.1 mRNA downstream 897059 8187334 ~ 8188387 (-) True LOC118942993
XM_036956781.1 mRNA upstream 13511 9101827 ~ 9104616 (-) False LOC118942864
XM_036956782.1 mRNA upstream 13513 9101829 ~ 9104614 (-) False LOC118942864
XM_036956783.1 mRNA upstream 13518 9101834 ~ 9104610 (-) False LOC118942864
XM_036956780.1 mRNA upstream 14270 9102586 ~ 9104616 (-) False LOC118942864
XM_036958459.1 mRNA upstream 18592 9106908 ~ 9111439 (-) True LOC118942995
TU1953016 other downstream 276522 8806909 ~ 8808924 (-) True LOC118942856
TU1952857 other downstream 552643 8531735 ~ 8532803 (-) False G1705386
TU1953186 other upstream 14102 9102418 ~ 9103155 (-) True LOC118942864
TU1953378 other upstream 186281 9274597 ~ 9277074 (-) True LOC118942865
TU1953431 other upstream 380307 9468623 ~ 9474354 (-) True LOC110515809
TU1953656 other upstream 553634 9641950 ~ 9642941 (-) True G1705975
TU1955083 other upstream 1272108 10360424 ~ 10360975 (-) True G1706990

Expression Profile