RNA id: XM_036956786.1


Basic Information

Item Value
RNA id XM_036956786.1
length 1368
RNA type mRNA
GC content 0.57
exon number 8
gene id zgc:194209
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9217225 ~ 9241339 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCCCAGTCCGTCTCACTCCTCCCCTTCCAGTCTTCTGTCCTCTGGATGAACTCTTTTTAAAATCACTCACTCTcagtccccacacacacacactcactctcagtctctctcagctGAAACAGACTACCTCTCTCCCGCGGCGCTCACCAGAACAGAAAACTACTTTCCTTCATGGCGGCGAGTCTCACCGGAGACAGGATCCAACCGGACTGTGATCTAACCGGACGGGCGCGAGCTGCAGAGGGATTCACTATATTCAAGGGACCCCCTCCGCTCCTGGAGGGCCCGCTGGCTGTCAACACCAGACTACAGAACGGACGCAGGCTGTTCACTGGACAACTGCATGGACCAGAATCCTTCACTGCGGACCCGGAGGGTAACGTGTACACAGGGACGGTGGATGGGAAGCTGTGGAGGATCCATCAGGAGACTCTAACCCTCATCACCCACATGGGACAGGACTTACAGGAGTGTGGTAGCAGGACAGACTATGAGCCAGTCTGTGGTCGTCCTCATGGTGTGCGGTTGGACAGTGGTGGTCAGCTGATCGTAGCGGACTCCTACTTTGGGCTGTTTTCTGTTGACCCCCAGACTGGACACAAGACCCTGCTACTGGACAGCAAGACAGGAGCTGACGGGGTTCCGTTTGCGTTCCTGAACGGGTTGGAGATCTCCTCTCAGACTGGGATCATTTACTTTACAGACTCCTCCTCTCGCTGGGGACGACGACACGTCAAACTAGAGGTGATAGAGACCAACGCTCTGGGTCGACTCCTGACCTTTGACCCCGTGTCAGGGCATGTGGGTGTCCTACTGGATGGTCTCTACATGCCCAATGGCATCGCCCTGTCACCTGACGAGAGCTTCCTGCTGCTGGCCGAAACCAGCATCGGGTGTAtcctcaggTACTGGCTGAAAGGCCCCAAGGCTGGCACCGAGGAGGTCATCATGAACAATATGCCCGGTTACCCTGACAACATCCGCCTTAGCGACCGTGGAACCTTCCTGGTTGGCCTAACGACCACACGCTTCAGGAAGCTCATGCCTCCATTCCTGGACCTGATTGGTCCGTACCCAGCGGTCAAACGCTTTCTGGCTAAGGTGGTTCCTCTGAGCTGGTACAACATGCTGTTGCCTAGATACGGCCTGGTGTTGGAGTTGGACGGGGAAGGGGAGGTGCTGGGGAGTCTCCATGACCCTACAGGCAGCCTGACCTGGGCCGTCAGCGACGTGTTCTCCCACCAGGGGAGACTCTACCTGGGTAGCACCGACCTGCCCTTCCTTCctgtcctggaggactggagctaaCCACTAACTTCTGCTGCAGGCCTCTCATACTAGGCCTGGGGGGGGCTGGGGGGGAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952779 lncRNA upstream 14730 9201370 ~ 9202495 (+) True G1705340
TU1952761 lncRNA upstream 64151 9152170 ~ 9153074 (+) True G1705323
TU1952735 lncRNA upstream 110737 9102434 ~ 9106488 (+) False G1705309
TU1952738 lncRNA upstream 110737 9102434 ~ 9106488 (+) False G1705309
TU1952739 lncRNA upstream 110737 9102434 ~ 9106488 (+) True G1705309
TU1953271 lncRNA downstream 2420 9243759 ~ 9244263 (+) True G1705665
TU1953272 lncRNA downstream 3244 9244583 ~ 9245096 (+) True G1705666
TU1953254 lncRNA downstream 11867 9253206 ~ 9254111 (+) True G1705648
TU1953255 lncRNA downstream 14890 9256229 ~ 9257527 (+) True G1705649
TU1953251 lncRNA downstream 18657 9259996 ~ 9260273 (+) True G1705646
XM_036956775.1 mRNA upstream 125735 8908286 ~ 9091490 (+) False eps8a
XM_036956776.1 mRNA upstream 132667 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA upstream 132667 9082796 ~ 9084558 (+) True LOC118942859
XR_005038493.1 mRNA upstream 190209 9024374 ~ 9027016 (+) True LOC118942863
XM_036956772.1 mRNA upstream 318854 8819609 ~ 8898371 (+) True LOC118942857
XM_036956789.1 mRNA downstream 95542 9336881 ~ 9354472 (+) False LOC110507941
XM_036956790.1 mRNA downstream 95542 9336881 ~ 9354472 (+) False LOC110507941
XM_036956791.1 mRNA downstream 95543 9336882 ~ 9354472 (+) False LOC110507941
XM_036956792.1 mRNA downstream 95543 9336882 ~ 9354472 (+) True LOC110507941
XM_036958472.1 mRNA downstream 146378 9387717 ~ 9391042 (+) False LOC118943004
TU1952626 other upstream 125820 9075492 ~ 9091405 (+) False eps8a
TU1952627 other upstream 125820 9075492 ~ 9091405 (+) False eps8a
TU1952628 other upstream 125820 9075492 ~ 9091405 (+) False eps8a
TU1952630 other upstream 125820 9075492 ~ 9091405 (+) False eps8a
TU1952632 other upstream 125820 9075492 ~ 9091405 (+) False eps8a
TU1953589 other downstream 413959 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 417992 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 506846 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 674374 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 893049 10134388 ~ 10135384 (+) True G1706152

Expression Profile