RNA id: TU1953378


Basic Information

Item Value
RNA id TU1953378
length 461
RNA type TUCP
GC content 0.49
exon number 3
gene id LOC118942865
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9261999 ~ 9277148 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTAACTACGTTTCACGCTTTTATCAATTTAGGAGTCGCAGCGAGAAGACACCGTCTTTAATTTCACAGTGAAACATGACCTCGATTCGGTTAAATCTGCCAACGTTATTGAATTGTCTCTTAATCTGCGTCACCTTGCTGTTGAATAACCGCTGCTGTGTCGTTGCCAAGTGGTATCACAGACCCAACGTTGTTTTGATCCTCACCGATGACCTGGACGTCGTTATTGGGGGCATGACCCCACTGAACAAGACCAAGAAACTGATTGGTGAAGCAGGGATCACCTTTACCAACGCTTTTGTAGCCAGCCCACTGTGCTGTCCCAGCAGAGCCAGCATCCTAACAGGAAAGTATCCTCATAACCACCATGTGATCAACAACACTCTGGAGGGGAACTGCAGCAGCACGGCCTGGCAGAAGACCCAGGAGCCCAAGACCTTCCCTGCTCTACTGCAGGCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953379 lncRNA downstream 12975 9260742 ~ 9261622 (-) True G1705756
TU1953377 lncRNA downstream 14719 9258780 ~ 9259878 (-) True G1705754
TU1953380 lncRNA downstream 17884 9256229 ~ 9256713 (-) True G1705757
TU1953391 lncRNA downstream 20409 9253591 ~ 9254188 (-) False G1705766
TU1953392 lncRNA downstream 20409 9253591 ~ 9254188 (-) True G1705766
TU1953412 lncRNA upstream 21928 9299002 ~ 9318903 (-) False G1705773
TU1953414 lncRNA upstream 21928 9299002 ~ 9332765 (-) False G1705773
TU1953399 lncRNA upstream 22425 9299499 ~ 9332765 (-) False G1705773
TU1953400 lncRNA upstream 22425 9299499 ~ 9306570 (-) False G1705773
TU1953402 lncRNA upstream 22425 9299499 ~ 9306570 (-) False G1705773
XM_036956784.1 mRNA downstream 69921 9111713 ~ 9204676 (-) True LOC110512574
XM_036958459.1 mRNA downstream 163158 9106908 ~ 9111439 (-) True LOC118942995
XM_036956781.1 mRNA downstream 169981 9101827 ~ 9104616 (-) False LOC118942864
XM_036956780.1 mRNA downstream 169981 9102586 ~ 9104616 (-) False LOC118942864
XM_036956782.1 mRNA downstream 169983 9101829 ~ 9104614 (-) False LOC118942864
XM_036956793.1 mRNA upstream 94679 9371753 ~ 9379485 (-) False LOC118936574
XM_036956794.1 mRNA upstream 94679 9371753 ~ 9379875 (-) True LOC118936574
XM_036956800.1 mRNA upstream 187007 9464081 ~ 9480505 (-) False LOC110515809
XM_036956799.1 mRNA upstream 187007 9464081 ~ 9480516 (-) False LOC110515809
XR_005038494.1 mRNA upstream 210507 9487581 ~ 9508460 (-) False LOC110507938
TU1953186 other downstream 171442 9102418 ~ 9103155 (-) True LOC118942864
TU1953016 other downstream 465673 8806909 ~ 8808924 (-) True LOC118942856
TU1952857 other downstream 741794 8531735 ~ 8532803 (-) False G1705386
TU1953431 other upstream 191549 9468623 ~ 9474354 (-) True LOC110515809
TU1953656 other upstream 364876 9641950 ~ 9642941 (-) True G1705975
TU1955083 other upstream 1083350 10360424 ~ 10360975 (-) True G1706990
TU1955088 other upstream 1090810 10367884 ~ 10368439 (-) True G1706993
TU1955159 other upstream 1253543 10530617 ~ 10531271 (-) True G1707057

Expression Profile