RNA id: XM_036956792.1


Basic Information

Item Value
RNA id XM_036956792.1
length 2504
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110507941
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9336881 ~ 9354472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttggattacaggctcaaaatggccagaaacaaataacttttttctgaaactcgtcagtctattcttgttctgagaaatgaaggctgttccatgcgagaaattgaggGTTTTCTCTGTGTCTTctgtcagagcaggagatgtgtTGTTAGAACTAGCAGGTTGTTGATGTAATTCTAGTCTGTCAgaacaggagatgtgttgttagAACTAGCAGGTTGTTGATGTAATTCTAGTCTGTCAgaacaggagatgtgttgttagAACTAGCAGGTTGTTGATGTGATTCTAGTCTGTCAGAACAGGAGATGTATTGTTAGAACTAGCAAGATGTTGATGTGATTCTAGTCTGTCAgaacaggagatgtgttgttggAACTAGCAGGATGTTGATGTGATTCTAGTCTGACTGATAATGAGAGTGGGCAGGGCTGAGGCTTTTAGGACACACCCACTAGTGTAGAGAGGAGGATATGGTCTGGTTGCTGTTCTGCAGTACCTTATTAtttcctcatctcttctccttacATCACTTCatttcactcctcctcctcctcctcaacagtGACTAATCCAAGCCAGAAGCAGTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTACACTACCAAGAccaagctactactactactacagtcacTGTGTTTCTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTATACTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTATCCTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTCGGTTGGCAGAATGTCTCTGCTGCTTTGTTGTATAGTGATGGCCCTGCACCTCGCAACAGGGCTGGATGCTGCCCCGGGGGTAGTGAACActacagaggaggaggtggaaggcgTGGACTCCCAGTCACCATGCCCAGCCGGGTGGCATCAGAATGAGCATCGCTGCTTCTCCTTCTACCCCGTCTGGGCCACCTGGGCCACTGCAGAGtTGTACTGCTCCCAGCACAGAGGGAACCTGGTGTCGGTTCACAGCCCGGGTCAACAGGTGTTTGTCCAGGATCTGGTCAGGAGACACACAGACCAGCCGGTCTGGATGGGAGGCTACGATGCAGCTCAGGAGGGGATGTGGCTGTGGAGTGACGGCTCAGCTGTTGACAGTTTCTACTGGGAGGAGGATGAGCCCAGTAACTCTGGACAGGGGGAGAACTGTATGGAGCTACACActggagGTGGGCAGGGCTGGAATGACGTGTCCTGTGCAGAGCTGAGGTTCTATGTGTGTTCTATGgagacaagATCTGGTTTAGCATCATTGCCAAGTCAGAAGAAATCACACGAGAGAGagcTGGTTAAAGAGGTGAGTATTTATGACGTCCTGTGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCTACTCAGCCTTCCTCAGAGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTATACCTGGACAGAGTCATCCCCATGCTGCGGGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGATGTTTCTCCAGAGAACACATCAACGCTACCAGGAGTCTCTGAAGGAGTCCCAGATCCAAACTCAACCACACCTGAACCTGTCCTCCATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTCCATGACATTGTAAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCCCTGGGAGAGAGGACCAGACAAggccccagcccctgcctctaccCCTGGCTAAacctcttcccctgcccctgctaccagtgggggagagaggacatgaaGCCAGACCAGAGGAACCAGAAGGATGAGTCTGGGACATATTACAGgcATCTACTGGAGAAGTACCAGGATGTGATAGACATCTACAAGGCTGTCAACATCTTCAGAGCCCAGATGATCAACGAGAAGGCTCTCTTCACCTCCAGCTGGTTTCCCACTGGTgacaaggaggaagaggaggaccaacCCAACCTGTTGTCTGTGGAGTCTGGTCCTGACGTTACGGTGAAGCTGTAGAAGTGCAGCTGATTGAATACAGGGAGCTGAGTGTGTAAGGCTGTGTGTGCTGGCTTTCACACTGGGCAGGACTGTTCCTCTTGTCAGACATATTCCAATATTCCACTTTTATGTTGGTAACTTCCCCCAAATAACTACTGTTCAGACTGTATTAATGCAATAACATAATGAATGTACACATCTAATAACACATTTAATTATTGTCAACAAAGGAGctacaataaaataaataacatttaggTTATAAAATCATAGAATGAAACTGTGTGAACTGTTCAACTGTATTTCCTTATGGGTATTGCAATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953249 lncRNA upstream 3744 9303748 ~ 9333138 (+) False G1705645
TU1953248 lncRNA upstream 3744 9331051 ~ 9333138 (+) True G1705645
TU1953247 lncRNA upstream 10486 9303748 ~ 9326396 (+) False G1705645
TU1953256 lncRNA upstream 15108 9315597 ~ 9321774 (+) True G1705650
TU1953243 lncRNA upstream 21867 9303748 ~ 9315015 (+) False G1705645
TU1953322 lncRNA downstream 36363 9390835 ~ 9391585 (+) False LOC118943004
TU1953323 lncRNA downstream 36363 9390835 ~ 9391585 (+) True LOC118943004
TU1953348 lncRNA downstream 114841 9469313 ~ 9471313 (+) True G1705728
TU1953531 lncRNA downstream 167587 9522059 ~ 9529433 (+) True G1705863
TU1953547 lncRNA downstream 182329 9536801 ~ 9537651 (+) True G1705879
XM_036956786.1 mRNA upstream 95543 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA upstream 95543 9217227 ~ 9241339 (+) True zgc:194209
XM_036956776.1 mRNA upstream 252324 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA upstream 252324 9082796 ~ 9084558 (+) True LOC118942859
XR_005038493.1 mRNA upstream 309866 9024374 ~ 9027016 (+) True LOC118942863
XM_036958472.1 mRNA downstream 33245 9387717 ~ 9391042 (+) False LOC118943004
XM_036956795.1 mRNA downstream 48022 9402494 ~ 9413171 (+) False LOC118936575
XM_036956796.1 mRNA downstream 48022 9402494 ~ 9413171 (+) False LOC118936575
XM_036956798.1 mRNA downstream 48030 9402502 ~ 9413171 (+) True LOC118936575
XM_036956805.1 mRNA downstream 177632 9532104 ~ 9722986 (+) True LOC118942866
TU1952627 other upstream 245477 9075492 ~ 9091405 (+) False eps8a
TU1953589 other downstream 300826 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 304859 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 393713 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 561241 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 779916 10134388 ~ 10135384 (+) True G1706152

Expression Profile