RNA id: XM_036958472.1


Basic Information

Item Value
RNA id XM_036958472.1
length 898
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC118943004
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9387717 ~ 9391585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTACGTTTTGTTCTCCCAGGCTATTGTACAAGCAGCCCAGTGTCTTGGCGGGTCGTACTGATGTGGTGGCAGTCACCCCGTGGTTGGCACCCATCGTCTGGGAAGGAACCTTTGACCCTGACCTCGTCGACACAATCTACAAGTCCATGAACATCACCATAGCAACCACAGTGTTTGCCGTTGGAAAATACGTCCGCTTTCTCAGAGATTTCCTGGAGACAGCAGAGAAGCACTTCCTGGTCGACTTCAACGTGCGCTACTACGTTTTCACAGATCGTCCTGACGATGTTCCGTCAGTGAACCTGTCTCAGGGGAGACATTTGAGTGTGATCCAGGTGCCAGGTTCAAACCGCTGGCAGGAGATATCAGCCCGGAGGATGGAGATCATCCAGACAGCCATCGAACGTCAGATCAGCAGGGAGGCCGACTACATCTTCTGTCTGGACGTGGACAGCAAGTTCCACGCTCGCTGGGGAGCCGAGTCTCTGGGCAGGCTGGTTGCTGTGATTCACCCATGGTTCTACCAGGTGACCCGTGACCACTTCACATACGAACGGCGTCCAGCCTCGACAGCTTACATCCCCATGGATGAGGGAGATTACTACTATGCCGGGGCCGTGTTCGGTGGGTTGTTGGAGGAAGTGTACACACTAACAAAGGTATGTCGGAACCAGCTTGAAGAGGATGCGAGGAATTCCATCGAGGCTGCCTGGCAGGAGGAGAGTCACCTCAACAGGTACCTGCTTTACAACAAGCCCAGCAAGCTGTTGTCTCCAGAGTACCAGTGGGATGACAAGAAGACCAAAACCAAAGAGGTCAAAGTAATTCGCTTCTCTTCTGTCGTTAAAAACTATGCTGAAATTCGTCCCAATGTATAGGACTAGGAATTGGATATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953249 lncRNA upstream 54579 9303748 ~ 9333138 (+) False G1705645
TU1953248 lncRNA upstream 54579 9331051 ~ 9333138 (+) True G1705645
TU1953247 lncRNA upstream 61321 9303748 ~ 9326396 (+) False G1705645
TU1953256 lncRNA upstream 65943 9315597 ~ 9321774 (+) True G1705650
TU1953243 lncRNA upstream 72702 9303748 ~ 9315015 (+) False G1705645
TU1953348 lncRNA downstream 78271 9469313 ~ 9471313 (+) True G1705728
TU1953531 lncRNA downstream 131017 9522059 ~ 9529433 (+) True G1705863
TU1953547 lncRNA downstream 145759 9536801 ~ 9537651 (+) True G1705879
TU1953548 lncRNA downstream 148207 9539249 ~ 9539450 (+) True G1705880
TU1953554 lncRNA downstream 157177 9548219 ~ 9548667 (+) True G1705884
XM_036956789.1 mRNA upstream 33245 9336881 ~ 9354472 (+) False LOC110507941
XM_036956790.1 mRNA upstream 33245 9336881 ~ 9354472 (+) False LOC110507941
XM_036956791.1 mRNA upstream 33245 9336882 ~ 9354472 (+) False LOC110507941
XM_036956792.1 mRNA upstream 33245 9336882 ~ 9354472 (+) True LOC110507941
XM_036956786.1 mRNA upstream 146378 9217225 ~ 9241339 (+) False zgc:194209
XM_036956795.1 mRNA downstream 11452 9402494 ~ 9413171 (+) False LOC118936575
XM_036956796.1 mRNA downstream 11452 9402494 ~ 9413171 (+) False LOC118936575
XM_036956798.1 mRNA downstream 11460 9402502 ~ 9413171 (+) True LOC118936575
XM_036956805.1 mRNA downstream 141062 9532104 ~ 9722986 (+) True LOC118942866
XR_005038495.1 mRNA downstream 378548 9769590 ~ 9770148 (+) False LOC118942867
TU1952627 other upstream 296312 9075492 ~ 9091405 (+) False eps8a
TU1953589 other downstream 264256 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 268289 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 357143 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 524671 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 743346 10134388 ~ 10135384 (+) True G1706152

Expression Profile