RNA id: XM_036956795.1


Basic Information

Item Value
RNA id XM_036956795.1
length 1804
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC118936575
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9402494 ~ 9413171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGCAGTACCTTATTAtttcctcatctcttctccttacATCACCTCatttcactcctcctcctcaacagTGACTAATCCAAGCCAGAAGCAGTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTACACTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCATGTACAGGTCGGTTGGCAGAATGTCTCTGCTGCTTTGTTGTGTAGTGACGGCTATGCACCTCTCAACAGGGCTGGATGCTGCCCCGGGGGTAGTGAACActacagaggaggaggtggaaggggtGGACTCCCAGTCACCATGCCCAGCCGGGTGGCATCAGAATGAGCATCGCTGCTTCTCCTTCTACCCCGTCTGGGCCACCTGGGCCACTGCAGAGtTGTACTGCTCCCAGCACAGAGGGAACCTGGTGTCGGTTCACAGCCCGGGTCAACAGGTGTTTGTCCAGGATCTGGTCAGGAGACACACAGACCAGCCGGTCTGGATAGGAGGCTACGATGCAGCTCAGGAGGGGATGTGGCTGTGGAGTGACGGCTCAGCTGTTGACAGTTTCTACTGGGAGGAGGATGAGCCCAGTAACTCTGGACAGGGGGAGAACTGTATGGAGCTACACACTGgagGTGGGCAGGGCTGGAATGACGTGTCCTGTGCAGAGCTGAGGTTCTATGTGTGTTCTATGgagacaagATCTGGTTTAGCAGCATTACCAAGTCAGAAGAAATCACACGAGAGAGAGCTGGTTGAAGAGGTGAGTATTTATGACGTCCTGTGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCGACACAACCTTCCTCAGAGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTATACCTGGACAGAGTCATCCCCATGCTGCGgGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGATGTTTCTCCAGAGAACACATCAACGCTACCAGGAGTCTCTGAAGGAGGCCCAGAACCAAACTCAACCACACCTGAACCTGTCCTCCATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTTCATGACATTGTAAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCGCTGGGAGAGAGGACCAGACCAggccccagcccctgcctctaccCCTGGCTAAacctcttcccctgcccctgctaccagtgggggagagaggacatgaaGCCAGACCAGAGGAACCAGAAGGATGAGTCTGGGACATATTACAGgcaTCTACTGGAGAAGTACCAGGATGTGATAGACGTCTATAAGGCTGTCAACATCTTCAGAGTCCAGATGATCAACGAGAAGGCTCTCTTCACCTCCAGCTGGTTTCCCACtggtgaagaggaggaagaggaggaccaacCCAACCTGTTGTCTGTGGAGTCTGGTCCTGACGTTAGGGTGAAGCTGTAGCAGTGCAGCTGTAGAATACAGGGAGCTGAGTGTGtaaggctgtgtgtgttggcttTCACACTGGGCAGGACTTCCACTTGTCAGACATATTccaatattacacttttatgTTGGTAACTTCCCCCAAATAACTACTGTTCAGACTGTATTAATGCAATAACACAATGAATGTACACATTTAATTATTGTCAACAAAgctacaataaaataaaaaagatttAGGTAATAAAATCATAGAATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953322 lncRNA upstream 10909 9390835 ~ 9391585 (+) False LOC118943004
TU1953323 lncRNA upstream 10909 9390835 ~ 9391585 (+) True LOC118943004
TU1953249 lncRNA upstream 69356 9303748 ~ 9333138 (+) False G1705645
TU1953248 lncRNA upstream 69356 9331051 ~ 9333138 (+) True G1705645
TU1953247 lncRNA upstream 76098 9303748 ~ 9326396 (+) False G1705645
TU1953348 lncRNA downstream 56142 9469313 ~ 9471313 (+) True G1705728
TU1953531 lncRNA downstream 108888 9522059 ~ 9529433 (+) True G1705863
TU1953547 lncRNA downstream 123630 9536801 ~ 9537651 (+) True G1705879
TU1953548 lncRNA downstream 126078 9539249 ~ 9539450 (+) True G1705880
TU1953554 lncRNA downstream 135048 9548219 ~ 9548667 (+) True G1705884
XM_036958472.1 mRNA upstream 11452 9387717 ~ 9391042 (+) False LOC118943004
XM_036956789.1 mRNA upstream 48022 9336881 ~ 9354472 (+) False LOC110507941
XM_036956790.1 mRNA upstream 48022 9336881 ~ 9354472 (+) False LOC110507941
XM_036956791.1 mRNA upstream 48022 9336882 ~ 9354472 (+) False LOC110507941
XM_036956792.1 mRNA upstream 48022 9336882 ~ 9354472 (+) True LOC110507941
XM_036956805.1 mRNA downstream 118933 9532104 ~ 9722986 (+) True LOC118942866
XR_005038495.1 mRNA downstream 356419 9769590 ~ 9770148 (+) False LOC118942867
XM_036956808.1 mRNA downstream 411679 9824850 ~ 9864743 (+) False LOC118942868
XM_021594958.2 mRNA downstream 455231 9868402 ~ 9870589 (+) True LOC110516560
XR_005038521.1 mRNA downstream 567624 9980795 ~ 9981137 (+) True LOC118942870
TU1952627 other upstream 311089 9075492 ~ 9091405 (+) False eps8a
TU1953589 other downstream 242127 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 246160 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 335014 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 502542 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 721217 10134388 ~ 10135384 (+) True G1706152

Expression Profile